Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 KISS1R-203ENST00000606939 964 ntTSL 5 BASIC17.38■□□□□ 0.37
CLIP3Q96DZ5 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
CLIP3Q96DZ5 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC17.38■□□□□ 0.37
CLIP3Q96DZ5 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
CLIP3Q96DZ5 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC17.38■□□□□ 0.37
CLIP3Q96DZ5 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC17.38■□□□□ 0.37
CLIP3Q96DZ5 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
CLIP3Q96DZ5 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
CLIP3Q96DZ5 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CLIP3Q96DZ5 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC17.37■□□□□ 0.37
CLIP3Q96DZ5 AC009102.3-201ENST00000623118 1491 ntBASIC17.37■□□□□ 0.37
CLIP3Q96DZ5 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
CLIP3Q96DZ5 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
CLIP3Q96DZ5 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CLIP3Q96DZ5 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
CLIP3Q96DZ5 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
CLIP3Q96DZ5 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
CLIP3Q96DZ5 MAGI3-203ENST00000369615 6508 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
CLIP3Q96DZ5 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
CLIP3Q96DZ5 ZSWIM8-213ENST00000603114 5919 ntTSL 5 BASIC17.37■□□□□ 0.37
CLIP3Q96DZ5 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CLIP3Q96DZ5 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CLIP3Q96DZ5 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CLIP3Q96DZ5 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CLIP3Q96DZ5 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CLIP3Q96DZ5 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
CLIP3Q96DZ5 MIR149-201ENST00000384879 89 ntBASIC17.37■□□□□ 0.37
CLIP3Q96DZ5 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC17.37■□□□□ 0.37
CLIP3Q96DZ5 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC17.37■□□□□ 0.37
CLIP3Q96DZ5 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
CLIP3Q96DZ5 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC17.37■□□□□ 0.37
CLIP3Q96DZ5 DRAXINP1-201ENST00000437611 948 ntBASIC17.37■□□□□ 0.37
CLIP3Q96DZ5 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC17.37■□□□□ 0.37
CLIP3Q96DZ5 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC17.37■□□□□ 0.37
CLIP3Q96DZ5 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC17.37■□□□□ 0.37
CLIP3Q96DZ5 PNN-202ENST00000553331 656 ntTSL 3 BASIC17.37■□□□□ 0.37
CLIP3Q96DZ5 TK1-205ENST00000590862 642 ntTSL 3 BASIC17.37■□□□□ 0.37
CLIP3Q96DZ5 GNAS-AS1-203ENST00000598163 548 ntTSL 4 BASIC17.37■□□□□ 0.37
CLIP3Q96DZ5 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CLIP3Q96DZ5 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC17.37■□□□□ 0.37
CLIP3Q96DZ5 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CLIP3Q96DZ5 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CLIP3Q96DZ5 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
CLIP3Q96DZ5 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CLIP3Q96DZ5 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
CLIP3Q96DZ5 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC17.37■□□□□ 0.37
CLIP3Q96DZ5 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
CLIP3Q96DZ5 AC112777.1-201ENST00000540175 1423 ntBASIC17.37■□□□□ 0.37
CLIP3Q96DZ5 ZNF84-201ENST00000327668 7162 ntAPPRIS P2 TSL 1 (best) BASIC17.37■□□□□ 0.37
CLIP3Q96DZ5 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CLIP3Q96DZ5 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
CLIP3Q96DZ5 TNXA-203ENST00000507684 2038 ntBASIC17.37■□□□□ 0.37
CLIP3Q96DZ5 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
CLIP3Q96DZ5 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
CLIP3Q96DZ5 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CLIP3Q96DZ5 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
CLIP3Q96DZ5 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CLIP3Q96DZ5 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
CLIP3Q96DZ5 CDK11B-204ENST00000407249 2677 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
CLIP3Q96DZ5 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CLIP3Q96DZ5 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CLIP3Q96DZ5 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
CLIP3Q96DZ5 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
CLIP3Q96DZ5 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
CLIP3Q96DZ5 ASPM-201ENST00000294732 6132 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
CLIP3Q96DZ5 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC17.36■□□□□ 0.37
CLIP3Q96DZ5 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
CLIP3Q96DZ5 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC17.36■□□□□ 0.37
CLIP3Q96DZ5 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CLIP3Q96DZ5 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC17.36■□□□□ 0.37
CLIP3Q96DZ5 MPI-205ENST00000562606 1052 ntTSL 3 BASIC17.36■□□□□ 0.37
CLIP3Q96DZ5 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC17.36■□□□□ 0.37
CLIP3Q96DZ5 IRF5-214ENST00000613821 595 ntTSL 5 BASIC17.36■□□□□ 0.37
CLIP3Q96DZ5 AC124864.1-201ENST00000623408 392 ntBASIC17.36■□□□□ 0.37
CLIP3Q96DZ5 RHOBTB1-201ENST00000337910 4473 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CLIP3Q96DZ5 PDE1C-206ENST00000396193 5109 ntAPPRIS P4 TSL 2 BASIC17.36■□□□□ 0.37
CLIP3Q96DZ5 COBL-210ENST00000632460 1941 ntTSL 5 BASIC17.36■□□□□ 0.37
CLIP3Q96DZ5 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC17.36■□□□□ 0.37
CLIP3Q96DZ5 ZBP1-202ENST00000395822 2073 ntTSL 2 BASIC17.36■□□□□ 0.37
CLIP3Q96DZ5 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
CLIP3Q96DZ5 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC17.36■□□□□ 0.37
CLIP3Q96DZ5 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CLIP3Q96DZ5 KRT89P-201ENST00000620027 1478 ntBASIC17.36■□□□□ 0.37
CLIP3Q96DZ5 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC17.36■□□□□ 0.37
CLIP3Q96DZ5 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
CLIP3Q96DZ5 MYLKP1-201ENST00000509077 1580 ntBASIC17.36■□□□□ 0.37
CLIP3Q96DZ5 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CLIP3Q96DZ5 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
CLIP3Q96DZ5 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
CLIP3Q96DZ5 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC17.36■□□□□ 0.37
CLIP3Q96DZ5 NRXN1-209ENST00000405581 5078 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
CLIP3Q96DZ5 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
CLIP3Q96DZ5 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CLIP3Q96DZ5 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC17.35■□□□□ 0.37
CLIP3Q96DZ5 MPV17L-201ENST00000287594 5820 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CLIP3Q96DZ5 PDK1-203ENST00000410055 2990 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
CLIP3Q96DZ5 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC17.35■□□□□ 0.37
CLIP3Q96DZ5 WIZ-201ENST00000263381 5695 ntAPPRIS P2 TSL 2 BASIC17.35■□□□□ 0.37
CLIP3Q96DZ5 TPST2-201ENST00000338754 5697 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CLIP3Q96DZ5 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 32.8 ms