Protein–RNA interactions for Protein: Q92889

ERCC4, DNA repair endonuclease XPF, humanhuman

Predicted RBP Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC4Q92889 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
ERCC4Q92889 PTPRU-202ENST00000373779 5579 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
ERCC4Q92889 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
ERCC4Q92889 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
ERCC4Q92889 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC20.43■□□□□ 0.86
ERCC4Q92889 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC20.43■□□□□ 0.86
ERCC4Q92889 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC20.43■□□□□ 0.86
ERCC4Q92889 ATXN2-201ENST00000377617 4702 ntAPPRIS P3 TSL 1 (best) BASIC20.43■□□□□ 0.86
ERCC4Q92889 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
ERCC4Q92889 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
ERCC4Q92889 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
ERCC4Q92889 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
ERCC4Q92889 DUSP4-201ENST00000240100 5537 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
ERCC4Q92889 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
ERCC4Q92889 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
ERCC4Q92889 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC20.43■□□□□ 0.86
ERCC4Q92889 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC20.43■□□□□ 0.86
ERCC4Q92889 AC007663.1-201ENST00000438948 1240 ntBASIC20.43■□□□□ 0.86
ERCC4Q92889 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC20.43■□□□□ 0.86
ERCC4Q92889 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC20.43■□□□□ 0.86
ERCC4Q92889 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
ERCC4Q92889 AC008550.1-201ENST00000511500 884 ntBASIC20.43■□□□□ 0.86
ERCC4Q92889 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
ERCC4Q92889 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC20.43■□□□□ 0.86
ERCC4Q92889 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC20.43■□□□□ 0.86
ERCC4Q92889 PTDSS1-202ENST00000517309 5177 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
ERCC4Q92889 C5orf30-201ENST00000319933 3049 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
ERCC4Q92889 WIZ-201ENST00000263381 5695 ntAPPRIS P2 TSL 2 BASIC20.43■□□□□ 0.86
ERCC4Q92889 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
ERCC4Q92889 FAM208A-209ENST00000493960 5600 ntAPPRIS P2 TSL 5 BASIC20.42■□□□□ 0.86
ERCC4Q92889 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC20.42■□□□□ 0.86
ERCC4Q92889 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC20.42■□□□□ 0.86
ERCC4Q92889 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC20.42■□□□□ 0.86
ERCC4Q92889 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
ERCC4Q92889 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
ERCC4Q92889 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
ERCC4Q92889 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
ERCC4Q92889 SLC25A1P2-201ENST00000430693 912 ntBASIC20.42■□□□□ 0.86
ERCC4Q92889 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC20.42■□□□□ 0.86
ERCC4Q92889 AL355075.4-201ENST00000554988 638 ntBASIC20.42■□□□□ 0.86
ERCC4Q92889 WWOX-216ENST00000569818 525 ntBASIC20.42■□□□□ 0.86
ERCC4Q92889 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC20.42■□□□□ 0.86
ERCC4Q92889 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC20.42■□□□□ 0.86
ERCC4Q92889 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
ERCC4Q92889 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC20.42■□□□□ 0.86
ERCC4Q92889 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
ERCC4Q92889 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
ERCC4Q92889 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
ERCC4Q92889 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC20.42■□□□□ 0.86
ERCC4Q92889 KRT8P9-201ENST00000558927 1449 ntBASIC20.42■□□□□ 0.86
ERCC4Q92889 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
ERCC4Q92889 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
ERCC4Q92889 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
ERCC4Q92889 NOMO2-211ENST00000621364 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
ERCC4Q92889 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
ERCC4Q92889 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
ERCC4Q92889 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC20.41■□□□□ 0.86
ERCC4Q92889 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC20.41■□□□□ 0.86
ERCC4Q92889 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC20.41■□□□□ 0.86
ERCC4Q92889 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC20.41■□□□□ 0.86
ERCC4Q92889 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC20.41■□□□□ 0.86
ERCC4Q92889 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC20.41■□□□□ 0.86
ERCC4Q92889 MYO1B-204ENST00000392318 5082 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
ERCC4Q92889 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
ERCC4Q92889 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
ERCC4Q92889 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC20.41■□□□□ 0.86
ERCC4Q92889 FITM1-202ENST00000559294 800 ntBASIC20.41■□□□□ 0.86
ERCC4Q92889 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC20.41■□□□□ 0.86
ERCC4Q92889 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC20.41■□□□□ 0.86
ERCC4Q92889 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
ERCC4Q92889 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC20.41■□□□□ 0.86
ERCC4Q92889 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC20.41■□□□□ 0.86
ERCC4Q92889 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
ERCC4Q92889 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
ERCC4Q92889 MYH14-202ENST00000376970 6787 ntAPPRIS ALT2 TSL 5 BASIC20.41■□□□□ 0.86
ERCC4Q92889 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
ERCC4Q92889 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC20.41■□□□□ 0.86
ERCC4Q92889 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC20.41■□□□□ 0.86
ERCC4Q92889 HCK-210ENST00000629881 1969 ntAPPRIS ALT2 TSL 2 BASIC20.41■□□□□ 0.86
ERCC4Q92889 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
ERCC4Q92889 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
ERCC4Q92889 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC20.4■□□□□ 0.86
ERCC4Q92889 ADAMTSL5-201ENST00000330475 2857 ntAPPRIS P1 TSL 2 BASIC20.4■□□□□ 0.86
ERCC4Q92889 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC20.4■□□□□ 0.86
ERCC4Q92889 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
ERCC4Q92889 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC20.4■□□□□ 0.86
ERCC4Q92889 SENP5-201ENST00000323460 6308 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
ERCC4Q92889 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC20.4■□□□□ 0.86
ERCC4Q92889 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
ERCC4Q92889 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
ERCC4Q92889 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
ERCC4Q92889 AL355312.1-201ENST00000407115 2176 ntBASIC20.4■□□□□ 0.86
ERCC4Q92889 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
ERCC4Q92889 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC20.4■□□□□ 0.86
ERCC4Q92889 TSPY17P-201ENST00000450329 467 ntBASIC20.4■□□□□ 0.86
ERCC4Q92889 SNORA78-201ENST00000459373 127 ntBASIC20.4■□□□□ 0.86
ERCC4Q92889 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
ERCC4Q92889 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC20.4■□□□□ 0.86
ERCC4Q92889 AC132938.6-201ENST00000623828 1655 ntBASIC20.4■□□□□ 0.86
ERCC4Q92889 GALNT17-201ENST00000333538 3884 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 26.2 ms