Protein–RNA interactions for Protein: Q6ZNA4

RNF111, E3 ubiquitin-protein ligase Arkadia, humanhuman

Predictions only

Length 994 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF111Q6ZNA4 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
RNF111Q6ZNA4 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC17.5■□□□□ 0.39
RNF111Q6ZNA4 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
RNF111Q6ZNA4 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
RNF111Q6ZNA4 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC17.5■□□□□ 0.39
RNF111Q6ZNA4 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
RNF111Q6ZNA4 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
RNF111Q6ZNA4 SRGAP2B-207ENST00000641863 2367 ntAPPRIS P5 BASIC17.5■□□□□ 0.39
RNF111Q6ZNA4 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC17.5■□□□□ 0.39
RNF111Q6ZNA4 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC17.5■□□□□ 0.39
RNF111Q6ZNA4 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
RNF111Q6ZNA4 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
RNF111Q6ZNA4 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
RNF111Q6ZNA4 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC17.5■□□□□ 0.39
RNF111Q6ZNA4 HMGA1P5-201ENST00000412453 271 ntBASIC17.5■□□□□ 0.39
RNF111Q6ZNA4 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC17.5■□□□□ 0.39
RNF111Q6ZNA4 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
RNF111Q6ZNA4 DUT-205ENST00000558813 769 ntTSL 2 BASIC17.5■□□□□ 0.39
RNF111Q6ZNA4 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC17.5■□□□□ 0.39
RNF111Q6ZNA4 GPX4-207ENST00000589115 812 ntTSL 2 BASIC17.5■□□□□ 0.39
RNF111Q6ZNA4 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC17.5■□□□□ 0.39
RNF111Q6ZNA4 FAM87A-204ENST00000613235 858 ntBASIC17.5■□□□□ 0.39
RNF111Q6ZNA4 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC17.5■□□□□ 0.39
RNF111Q6ZNA4 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC17.5■□□□□ 0.39
RNF111Q6ZNA4 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
RNF111Q6ZNA4 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC17.5■□□□□ 0.39
RNF111Q6ZNA4 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
RNF111Q6ZNA4 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
RNF111Q6ZNA4 PCDH8P1-201ENST00000428983 2773 ntBASIC17.5■□□□□ 0.39
RNF111Q6ZNA4 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC17.5■□□□□ 0.39
RNF111Q6ZNA4 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
RNF111Q6ZNA4 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
RNF111Q6ZNA4 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
RNF111Q6ZNA4 GPAT2P1-201ENST00000444924 1672 ntBASIC17.49■□□□□ 0.39
RNF111Q6ZNA4 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
RNF111Q6ZNA4 ADRA1A-204ENST00000380573 2548 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
RNF111Q6ZNA4 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
RNF111Q6ZNA4 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC17.49■□□□□ 0.39
RNF111Q6ZNA4 RCC2P3-201ENST00000418112 1537 ntBASIC17.49■□□□□ 0.39
RNF111Q6ZNA4 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC17.49■□□□□ 0.39
RNF111Q6ZNA4 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC17.49■□□□□ 0.39
RNF111Q6ZNA4 MCCD1P1-208ENST00000445732 328 ntBASIC17.49■□□□□ 0.39
RNF111Q6ZNA4 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC17.49■□□□□ 0.39
RNF111Q6ZNA4 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC17.49■□□□□ 0.39
RNF111Q6ZNA4 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC17.49■□□□□ 0.39
RNF111Q6ZNA4 AC005363.2-201ENST00000618631 242 ntBASIC17.49■□□□□ 0.39
RNF111Q6ZNA4 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
RNF111Q6ZNA4 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
RNF111Q6ZNA4 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC17.49■□□□□ 0.39
RNF111Q6ZNA4 KRT8P32-201ENST00000512863 1461 ntBASIC17.49■□□□□ 0.39
RNF111Q6ZNA4 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
RNF111Q6ZNA4 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC17.49■□□□□ 0.39
RNF111Q6ZNA4 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
RNF111Q6ZNA4 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC17.49■□□□□ 0.39
RNF111Q6ZNA4 MFSD11-207ENST00000586622 2952 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
RNF111Q6ZNA4 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC17.49■□□□□ 0.39
RNF111Q6ZNA4 STK4-201ENST00000372801 2038 ntTSL 2 BASIC17.48■□□□□ 0.39
RNF111Q6ZNA4 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
RNF111Q6ZNA4 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
RNF111Q6ZNA4 LINC01502-201ENST00000445997 2471 ntTSL 2 BASIC17.48■□□□□ 0.39
RNF111Q6ZNA4 NME9-203ENST00000383180 2133 ntTSL 2 BASIC17.48■□□□□ 0.39
RNF111Q6ZNA4 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
RNF111Q6ZNA4 AES-201ENST00000221561 1884 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
RNF111Q6ZNA4 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC17.48■□□□□ 0.39
RNF111Q6ZNA4 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC17.48■□□□□ 0.39
RNF111Q6ZNA4 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
RNF111Q6ZNA4 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC17.48■□□□□ 0.39
RNF111Q6ZNA4 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
RNF111Q6ZNA4 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC17.48■□□□□ 0.39
RNF111Q6ZNA4 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC17.48■□□□□ 0.39
RNF111Q6ZNA4 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
RNF111Q6ZNA4 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC17.48■□□□□ 0.39
RNF111Q6ZNA4 AL023284.2-201ENST00000405850 579 ntBASIC17.48■□□□□ 0.39
RNF111Q6ZNA4 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC17.48■□□□□ 0.39
RNF111Q6ZNA4 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC17.48■□□□□ 0.39
RNF111Q6ZNA4 SLC25A3P1-201ENST00000443844 931 ntBASIC17.48■□□□□ 0.39
RNF111Q6ZNA4 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC17.48■□□□□ 0.39
RNF111Q6ZNA4 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC17.48■□□□□ 0.39
RNF111Q6ZNA4 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC17.48■□□□□ 0.39
RNF111Q6ZNA4 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC17.48■□□□□ 0.39
RNF111Q6ZNA4 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC17.48■□□□□ 0.39
RNF111Q6ZNA4 VSTM2A-204ENST00000407838 3112 ntAPPRIS P1 TSL 3 BASIC17.48■□□□□ 0.39
RNF111Q6ZNA4 RAB11FIP2-201ENST00000355624 6061 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
RNF111Q6ZNA4 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC17.48■□□□□ 0.39
RNF111Q6ZNA4 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC17.48■□□□□ 0.39
RNF111Q6ZNA4 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC17.48■□□□□ 0.39
RNF111Q6ZNA4 HS6ST2-204ENST00000521489 2607 ntTSL 5 BASIC17.48■□□□□ 0.39
RNF111Q6ZNA4 PRKAR2A-201ENST00000265563 6471 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
RNF111Q6ZNA4 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
RNF111Q6ZNA4 ABCG5-201ENST00000260645 2740 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
RNF111Q6ZNA4 KRT23-201ENST00000209718 1987 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
RNF111Q6ZNA4 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
RNF111Q6ZNA4 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
RNF111Q6ZNA4 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
RNF111Q6ZNA4 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
RNF111Q6ZNA4 SH3BP5-206ENST00000426925 2190 ntTSL 2 BASIC17.47■□□□□ 0.39
RNF111Q6ZNA4 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
RNF111Q6ZNA4 IQSEC2-218ENST00000640694 5958 ntAPPRIS ALT2 TSL 5 BASIC17.47■□□□□ 0.39
RNF111Q6ZNA4 KRT8P45-201ENST00000414328 1447 ntBASIC17.47■□□□□ 0.39
RNF111Q6ZNA4 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC17.47■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 23.5 ms