Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
USP41Q3LFD5 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
USP41Q3LFD5 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC19.1■□□□□ 0.65
USP41Q3LFD5 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC19.1■□□□□ 0.65
USP41Q3LFD5 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC19.1■□□□□ 0.65
USP41Q3LFD5 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC19.1■□□□□ 0.65
USP41Q3LFD5 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC19.1■□□□□ 0.65
USP41Q3LFD5 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC19.1■□□□□ 0.65
USP41Q3LFD5 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
USP41Q3LFD5 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
USP41Q3LFD5 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC19.1■□□□□ 0.65
USP41Q3LFD5 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC19.1■□□□□ 0.65
USP41Q3LFD5 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
USP41Q3LFD5 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
USP41Q3LFD5 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC19.1■□□□□ 0.65
USP41Q3LFD5 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
USP41Q3LFD5 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
USP41Q3LFD5 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
USP41Q3LFD5 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
USP41Q3LFD5 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC19.1■□□□□ 0.65
USP41Q3LFD5 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
USP41Q3LFD5 CAPG-203ENST00000409670 1183 ntAPPRIS P1 TSL 5 BASIC19.1■□□□□ 0.65
USP41Q3LFD5 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC19.1■□□□□ 0.65
USP41Q3LFD5 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
USP41Q3LFD5 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC19.1■□□□□ 0.65
USP41Q3LFD5 SLC25A1P1-201ENST00000528351 927 ntBASIC19.1■□□□□ 0.65
USP41Q3LFD5 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC19.1■□□□□ 0.65
USP41Q3LFD5 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC19.1■□□□□ 0.65
USP41Q3LFD5 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC19.1■□□□□ 0.65
USP41Q3LFD5 GPALPP1-207ENST00000611650 899 ntBASIC19.1■□□□□ 0.65
USP41Q3LFD5 MIR7706-201ENST00000613747 67 ntBASIC19.1■□□□□ 0.65
USP41Q3LFD5 AC117500.6-201ENST00000624871 588 ntBASIC19.1■□□□□ 0.65
USP41Q3LFD5 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC19.1■□□□□ 0.65
USP41Q3LFD5 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC19.1■□□□□ 0.65
USP41Q3LFD5 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC19.1■□□□□ 0.65
USP41Q3LFD5 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
USP41Q3LFD5 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
USP41Q3LFD5 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
USP41Q3LFD5 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
USP41Q3LFD5 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
USP41Q3LFD5 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
USP41Q3LFD5 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
USP41Q3LFD5 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC19.09■□□□□ 0.65
USP41Q3LFD5 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC19.09■□□□□ 0.65
USP41Q3LFD5 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC19.09■□□□□ 0.65
USP41Q3LFD5 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
USP41Q3LFD5 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
USP41Q3LFD5 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
USP41Q3LFD5 AC097374.2-201ENST00000618617 1306 ntBASIC19.09■□□□□ 0.65
USP41Q3LFD5 AC132938.6-201ENST00000623828 1655 ntBASIC19.09■□□□□ 0.65
USP41Q3LFD5 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
USP41Q3LFD5 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC19.09■□□□□ 0.65
USP41Q3LFD5 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC19.09■□□□□ 0.65
USP41Q3LFD5 CD9-202ENST00000382515 1229 ntTSL 5 BASIC19.09■□□□□ 0.65
USP41Q3LFD5 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC19.09■□□□□ 0.65
USP41Q3LFD5 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC19.09■□□□□ 0.65
USP41Q3LFD5 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC19.09■□□□□ 0.65
USP41Q3LFD5 HNRNPDP1-201ENST00000439535 754 ntBASIC19.09■□□□□ 0.65
USP41Q3LFD5 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC19.09■□□□□ 0.65
USP41Q3LFD5 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC19.09■□□□□ 0.65
USP41Q3LFD5 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC19.09■□□□□ 0.65
USP41Q3LFD5 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC19.09■□□□□ 0.65
USP41Q3LFD5 LITAF-211ENST00000572255 516 ntTSL 4 BASIC19.09■□□□□ 0.65
USP41Q3LFD5 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC19.09■□□□□ 0.65
USP41Q3LFD5 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC19.09■□□□□ 0.65
USP41Q3LFD5 AL049840.3-201ENST00000602669 611 ntBASIC19.09■□□□□ 0.65
USP41Q3LFD5 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC19.09■□□□□ 0.65
USP41Q3LFD5 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
USP41Q3LFD5 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC19.09■□□□□ 0.65
USP41Q3LFD5 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC19.09■□□□□ 0.65
USP41Q3LFD5 TBC1D3P5-201ENST00000579401 1545 ntBASIC19.09■□□□□ 0.65
USP41Q3LFD5 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC19.09■□□□□ 0.65
USP41Q3LFD5 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC19.09■□□□□ 0.65
USP41Q3LFD5 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC19.09■□□□□ 0.65
USP41Q3LFD5 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
USP41Q3LFD5 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC19.08■□□□□ 0.65
USP41Q3LFD5 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC19.08■□□□□ 0.65
USP41Q3LFD5 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
USP41Q3LFD5 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.65
USP41Q3LFD5 AL356309.3-201ENST00000624132 1934 ntBASIC19.08■□□□□ 0.65
USP41Q3LFD5 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
USP41Q3LFD5 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC19.08■□□□□ 0.65
USP41Q3LFD5 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
USP41Q3LFD5 ROMO1-203ENST00000374077 422 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
USP41Q3LFD5 FAM220CP-201ENST00000395253 831 ntBASIC19.08■□□□□ 0.64
USP41Q3LFD5 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC19.08■□□□□ 0.64
USP41Q3LFD5 SART3-203ENST00000546611 1184 ntBASIC19.08■□□□□ 0.64
USP41Q3LFD5 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
USP41Q3LFD5 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
USP41Q3LFD5 AC021087.4-201ENST00000563761 564 ntBASIC19.08■□□□□ 0.64
USP41Q3LFD5 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC19.08■□□□□ 0.64
USP41Q3LFD5 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC19.08■□□□□ 0.64
USP41Q3LFD5 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
USP41Q3LFD5 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC19.08■□□□□ 0.64
USP41Q3LFD5 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
USP41Q3LFD5 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.64
USP41Q3LFD5 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
USP41Q3LFD5 ADCY5-202ENST00000462833 7311 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
USP41Q3LFD5 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
USP41Q3LFD5 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 25.4 ms