Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
BRCA1P38398 C10orf35-201ENST00000373279 1065 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
BRCA1P38398 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
BRCA1P38398 UGT1A2P-201ENST00000454886 866 ntBASIC21.73■■□□□ 1.07
BRCA1P38398 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC21.73■■□□□ 1.07
BRCA1P38398 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC21.73■■□□□ 1.07
BRCA1P38398 RIC8B-209ENST00000549643 571 ntTSL 4 BASIC21.73■■□□□ 1.07
BRCA1P38398 AC015712.4-202ENST00000558641 1007 ntTSL 4 BASIC21.73■■□□□ 1.07
BRCA1P38398 AC025678.2-201ENST00000562061 970 ntBASIC21.73■■□□□ 1.07
BRCA1P38398 CYB561-216ENST00000582297 897 ntTSL 3 BASIC21.73■■□□□ 1.07
BRCA1P38398 RN7SL204P-201ENST00000582831 262 ntBASIC21.73■■□□□ 1.07
BRCA1P38398 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC21.73■■□□□ 1.07
BRCA1P38398 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC21.73■■□□□ 1.07
BRCA1P38398 GGTLC5P-201ENST00000617623 998 ntBASIC21.73■■□□□ 1.07
BRCA1P38398 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC21.73■■□□□ 1.07
BRCA1P38398 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
BRCA1P38398 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC21.73■■□□□ 1.07
BRCA1P38398 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
BRCA1P38398 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC21.73■■□□□ 1.07
BRCA1P38398 AC074386.1-202ENST00000463561 864 ntBASIC21.73■■□□□ 1.07
BRCA1P38398 GCHFR-204ENST00000559445 626 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
BRCA1P38398 TVP23B-206ENST00000574226 1080 ntAPPRIS ALT1 TSL 1 (best) BASIC21.73■■□□□ 1.07
BRCA1P38398 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC21.73■■□□□ 1.07
BRCA1P38398 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
BRCA1P38398 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
BRCA1P38398 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
BRCA1P38398 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC21.72■■□□□ 1.07
BRCA1P38398 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC21.72■■□□□ 1.07
BRCA1P38398 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC21.72■■□□□ 1.07
BRCA1P38398 GULP1-209ENST00000410051 1595 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
BRCA1P38398 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
BRCA1P38398 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC21.72■■□□□ 1.07
BRCA1P38398 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC21.72■■□□□ 1.07
BRCA1P38398 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
BRCA1P38398 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
BRCA1P38398 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC21.72■■□□□ 1.07
BRCA1P38398 AL391845.1-202ENST00000449154 437 ntTSL 3 BASIC21.72■■□□□ 1.07
BRCA1P38398 CCDC159-201ENST00000458408 1062 ntAPPRIS P1 TSL 5 BASIC21.72■■□□□ 1.07
BRCA1P38398 AC106795.3-201ENST00000511650 547 ntTSL 4 BASIC21.72■■□□□ 1.07
BRCA1P38398 OR10S1-201ENST00000531945 1121 ntAPPRIS P2 BASIC21.72■■□□□ 1.07
BRCA1P38398 AP001059.3-201ENST00000619053 235 ntBASIC21.72■■□□□ 1.07
BRCA1P38398 OR10S1-202ENST00000641123 1121 ntAPPRIS ALT2 BASIC21.72■■□□□ 1.07
BRCA1P38398 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
BRCA1P38398 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC21.72■■□□□ 1.07
BRCA1P38398 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC21.72■■□□□ 1.07
BRCA1P38398 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC21.72■■□□□ 1.07
BRCA1P38398 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC21.72■■□□□ 1.07
BRCA1P38398 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
BRCA1P38398 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
BRCA1P38398 CKS1B-202ENST00000368436 820 ntTSL 2 BASIC21.71■■□□□ 1.07
BRCA1P38398 FAM159B-201ENST00000389074 847 ntAPPRIS P1 TSL 2 BASIC21.71■■□□□ 1.07
BRCA1P38398 DDT-204ENST00000404092 805 ntTSL 3 BASIC21.71■■□□□ 1.07
BRCA1P38398 FLG-AS1-204ENST00000420707 906 ntTSL 5 BASIC21.71■■□□□ 1.07
BRCA1P38398 AC073283.1-201ENST00000421759 860 ntTSL 3 BASIC21.71■■□□□ 1.07
BRCA1P38398 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC21.71■■□□□ 1.07
BRCA1P38398 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
BRCA1P38398 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
BRCA1P38398 AC019129.2-201ENST00000609837 1235 ntBASIC21.71■■□□□ 1.07
BRCA1P38398 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
BRCA1P38398 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC21.71■■□□□ 1.07
BRCA1P38398 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC21.71■■□□□ 1.07
BRCA1P38398 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC21.71■■□□□ 1.07
BRCA1P38398 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
BRCA1P38398 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
BRCA1P38398 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC21.71■■□□□ 1.07
BRCA1P38398 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC21.71■■□□□ 1.07
BRCA1P38398 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC21.71■■□□□ 1.07
BRCA1P38398 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC21.71■■□□□ 1.07
BRCA1P38398 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
BRCA1P38398 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
BRCA1P38398 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
BRCA1P38398 HLA-DRB6-201ENST00000411500 1235 ntBASIC21.71■■□□□ 1.07
BRCA1P38398 FAM207CP-201ENST00000443486 507 ntBASIC21.71■■□□□ 1.07
BRCA1P38398 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC21.71■■□□□ 1.07
BRCA1P38398 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
BRCA1P38398 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC21.71■■□□□ 1.07
BRCA1P38398 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC21.7■■□□□ 1.07
BRCA1P38398 AC093010.1-201ENST00000473625 1624 ntBASIC21.7■■□□□ 1.07
BRCA1P38398 AC005082.1-201ENST00000413042 2259 ntBASIC21.7■■□□□ 1.06
BRCA1P38398 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.06
BRCA1P38398 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
BRCA1P38398 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
BRCA1P38398 AL032819.2-201ENST00000624543 2162 ntBASIC21.7■■□□□ 1.06
BRCA1P38398 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
BRCA1P38398 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC21.7■■□□□ 1.06
BRCA1P38398 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
BRCA1P38398 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
BRCA1P38398 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC21.7■■□□□ 1.06
BRCA1P38398 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
BRCA1P38398 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
BRCA1P38398 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC21.7■■□□□ 1.06
BRCA1P38398 GAPDHP21-201ENST00000450301 1010 ntBASIC21.7■■□□□ 1.06
BRCA1P38398 VPS29-207ENST00000549970 818 ntTSL 3 BASIC21.7■■□□□ 1.06
BRCA1P38398 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
BRCA1P38398 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC21.7■■□□□ 1.06
BRCA1P38398 AC063926.2-201ENST00000623766 1308 ntBASIC21.7■■□□□ 1.06
BRCA1P38398 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC21.7■■□□□ 1.06
BRCA1P38398 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
BRCA1P38398 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC21.7■■□□□ 1.06
BRCA1P38398 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 31.8 ms