Protein–RNA interactions for Protein: P28702

RXRB, Retinoic acid receptor RXR-beta, humanhuman

Predictions only

Length 533 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RXRBP28702 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
RXRBP28702 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC23.4■■□□□ 1.34
RXRBP28702 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC23.4■■□□□ 1.34
RXRBP28702 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
RXRBP28702 SLC18B1-202ENST00000367918 472 ntTSL 5 BASIC23.4■■□□□ 1.34
RXRBP28702 ADM2-201ENST00000395737 535 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
RXRBP28702 AC096633.1-201ENST00000422446 749 ntBASIC23.4■■□□□ 1.34
RXRBP28702 UBE2H-204ENST00000473814 535 ntTSL 1 (best) BASIC23.4■■□□□ 1.34
RXRBP28702 S100A2-206ENST00000497140 697 ntTSL 2 BASIC23.4■■□□□ 1.34
RXRBP28702 AC008378.1-201ENST00000521251 496 ntTSL 5 BASIC23.4■■□□□ 1.34
RXRBP28702 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC23.4■■□□□ 1.34
RXRBP28702 AC009118.2-201ENST00000613275 655 ntBASIC23.4■■□□□ 1.34
RXRBP28702 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC23.4■■□□□ 1.34
RXRBP28702 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
RXRBP28702 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC23.4■■□□□ 1.34
RXRBP28702 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.34
RXRBP28702 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.34
RXRBP28702 MTMR9LP-203ENST00000426597 1545 ntBASIC23.39■■□□□ 1.34
RXRBP28702 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC23.39■■□□□ 1.34
RXRBP28702 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC23.39■■□□□ 1.33
RXRBP28702 RBPMS2P1-201ENST00000437762 623 ntBASIC23.39■■□□□ 1.33
RXRBP28702 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC23.39■■□□□ 1.33
RXRBP28702 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC23.39■■□□□ 1.33
RXRBP28702 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC23.39■■□□□ 1.33
RXRBP28702 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC23.39■■□□□ 1.33
RXRBP28702 SPIN2A-203ENST00000614076 966 ntTSL 3 BASIC23.39■■□□□ 1.33
RXRBP28702 AC008677.1-201ENST00000519230 1561 ntBASIC23.39■■□□□ 1.33
RXRBP28702 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC23.39■■□□□ 1.33
RXRBP28702 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC23.39■■□□□ 1.33
RXRBP28702 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC23.39■■□□□ 1.33
RXRBP28702 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.33
RXRBP28702 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.33
RXRBP28702 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.33
RXRBP28702 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC23.38■■□□□ 1.33
RXRBP28702 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
RXRBP28702 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC23.38■■□□□ 1.33
RXRBP28702 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
RXRBP28702 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC23.38■■□□□ 1.33
RXRBP28702 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC23.38■■□□□ 1.33
RXRBP28702 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
RXRBP28702 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC23.38■■□□□ 1.33
RXRBP28702 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC23.38■■□□□ 1.33
RXRBP28702 STMN1-204ENST00000426559 948 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
RXRBP28702 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC23.38■■□□□ 1.33
RXRBP28702 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC23.38■■□□□ 1.33
RXRBP28702 PTPA-220ENST00000436883 532 ntTSL 4 BASIC23.38■■□□□ 1.33
RXRBP28702 H2AFV-206ENST00000437072 589 ntTSL 4 BASIC23.38■■□□□ 1.33
RXRBP28702 LINC01818-201ENST00000437118 368 ntTSL 2 BASIC23.38■■□□□ 1.33
RXRBP28702 AL356489.1-201ENST00000449144 1144 ntTSL 3 BASIC23.38■■□□□ 1.33
RXRBP28702 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC23.38■■□□□ 1.33
RXRBP28702 AC079140.1-201ENST00000508039 487 ntBASIC23.38■■□□□ 1.33
RXRBP28702 GALNT9-208ENST00000541995 1001 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
RXRBP28702 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC23.38■■□□□ 1.33
RXRBP28702 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC23.38■■□□□ 1.33
RXRBP28702 Six3os1_5.1-201ENST00000611000 271 ntBASIC23.38■■□□□ 1.33
RXRBP28702 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC23.38■■□□□ 1.33
RXRBP28702 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC23.38■■□□□ 1.33
RXRBP28702 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC23.38■■□□□ 1.33
RXRBP28702 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC23.38■■□□□ 1.33
RXRBP28702 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC23.38■■□□□ 1.33
RXRBP28702 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC23.38■■□□□ 1.33
RXRBP28702 FP475955.4-201ENST00000623131 1990 ntBASIC23.38■■□□□ 1.33
RXRBP28702 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
RXRBP28702 AC073314.1-201ENST00000568729 2216 ntBASIC23.37■■□□□ 1.33
RXRBP28702 CALM1-216ENST00000626705 1341 ntTSL 5 BASIC23.37■■□□□ 1.33
RXRBP28702 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
RXRBP28702 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC23.37■■□□□ 1.33
RXRBP28702 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC23.37■■□□□ 1.33
RXRBP28702 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC23.37■■□□□ 1.33
RXRBP28702 FIBP-201ENST00000338369 1261 ntTSL 1 (best) BASIC23.37■■□□□ 1.33
RXRBP28702 ERGIC1-212ENST00000523291 586 ntTSL 2 BASIC23.37■■□□□ 1.33
RXRBP28702 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC23.37■■□□□ 1.33
RXRBP28702 FAM192A-212ENST00000566077 1066 ntTSL 3 BASIC23.37■■□□□ 1.33
RXRBP28702 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
RXRBP28702 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC23.37■■□□□ 1.33
RXRBP28702 ASNA1-204ENST00000591090 1368 ntAPPRIS P1 TSL 5 BASIC23.37■■□□□ 1.33
RXRBP28702 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC23.37■■□□□ 1.33
RXRBP28702 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC23.36■■□□□ 1.33
RXRBP28702 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
RXRBP28702 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
RXRBP28702 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
RXRBP28702 ZSCAN2-203ENST00000334141 993 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
RXRBP28702 MIR1909-201ENST00000411312 80 ntBASIC23.36■■□□□ 1.33
RXRBP28702 AC007405.3-202ENST00000426475 660 ntTSL 3 BASIC23.36■■□□□ 1.33
RXRBP28702 AL627443.1-201ENST00000456477 1035 ntTSL 3 BASIC23.36■■□□□ 1.33
RXRBP28702 AC092658.1-201ENST00000505836 891 ntBASIC23.36■■□□□ 1.33
RXRBP28702 AC069120.2-201ENST00000524091 540 ntBASIC23.36■■□□□ 1.33
RXRBP28702 ZFPL1-207ENST00000526791 384 ntTSL 3 BASIC23.36■■□□□ 1.33
RXRBP28702 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC23.36■■□□□ 1.33
RXRBP28702 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
RXRBP28702 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC23.36■■□□□ 1.33
RXRBP28702 GNRHR2-204ENST00000604273 1078 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
RXRBP28702 AC004233.3-201ENST00000607794 1269 ntBASIC23.36■■□□□ 1.33
RXRBP28702 AC239798.4-201ENST00000609879 700 ntTSL 2 BASIC23.36■■□□□ 1.33
RXRBP28702 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC23.36■■□□□ 1.33
RXRBP28702 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC23.36■■□□□ 1.33
RXRBP28702 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
RXRBP28702 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC23.36■■□□□ 1.33
RXRBP28702 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
RXRBP28702 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC23.36■■□□□ 1.33
Retrieved 100 of 98,524 protein–RNA pairs in 28.8 ms