Protein–RNA interactions for Protein: P12107

COL11A1, Collagen alpha-1(XI) chain, humanhuman

Predicted RBP Predictions only

Length 1,806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL11A1P12107 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
COL11A1P12107 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC20.33■□□□□ 0.85
COL11A1P12107 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
COL11A1P12107 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC20.33■□□□□ 0.85
COL11A1P12107 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.85
COL11A1P12107 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC20.33■□□□□ 0.85
COL11A1P12107 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.85
COL11A1P12107 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC20.33■□□□□ 0.85
COL11A1P12107 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC20.33■□□□□ 0.85
COL11A1P12107 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
COL11A1P12107 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
COL11A1P12107 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
COL11A1P12107 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC20.33■□□□□ 0.85
COL11A1P12107 UPF3AP3-201ENST00000420996 769 ntBASIC20.33■□□□□ 0.85
COL11A1P12107 AC009947.1-201ENST00000444350 727 ntBASIC20.33■□□□□ 0.85
COL11A1P12107 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC20.33■□□□□ 0.85
COL11A1P12107 AC136632.2-201ENST00000512891 861 ntBASIC20.33■□□□□ 0.85
COL11A1P12107 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC20.33■□□□□ 0.85
COL11A1P12107 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC20.33■□□□□ 0.85
COL11A1P12107 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC20.33■□□□□ 0.85
COL11A1P12107 AC019129.2-201ENST00000609837 1235 ntBASIC20.33■□□□□ 0.85
COL11A1P12107 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC20.33■□□□□ 0.85
COL11A1P12107 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
COL11A1P12107 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC20.33■□□□□ 0.84
COL11A1P12107 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC20.33■□□□□ 0.84
COL11A1P12107 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC20.33■□□□□ 0.84
COL11A1P12107 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC20.33■□□□□ 0.84
COL11A1P12107 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
COL11A1P12107 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
COL11A1P12107 AC009949.1-201ENST00000623048 1830 ntBASIC20.32■□□□□ 0.84
COL11A1P12107 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
COL11A1P12107 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC20.32■□□□□ 0.84
COL11A1P12107 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC20.32■□□□□ 0.84
COL11A1P12107 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
COL11A1P12107 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC20.32■□□□□ 0.84
COL11A1P12107 AC006557.2-201ENST00000592985 1240 ntBASIC20.32■□□□□ 0.84
COL11A1P12107 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC20.32■□□□□ 0.84
COL11A1P12107 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC20.32■□□□□ 0.84
COL11A1P12107 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC20.32■□□□□ 0.84
COL11A1P12107 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
COL11A1P12107 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
COL11A1P12107 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
COL11A1P12107 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC20.32■□□□□ 0.84
COL11A1P12107 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC20.32■□□□□ 0.84
COL11A1P12107 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC20.32■□□□□ 0.84
COL11A1P12107 AC135776.1-201ENST00000319817 2481 ntBASIC20.32■□□□□ 0.84
COL11A1P12107 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC20.32■□□□□ 0.84
COL11A1P12107 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
COL11A1P12107 AC040169.1-201ENST00000565382 521 ntBASIC20.32■□□□□ 0.84
COL11A1P12107 COPE-211ENST00000600932 1144 ntTSL 5 BASIC20.32■□□□□ 0.84
COL11A1P12107 AC073592.5-201ENST00000624854 528 ntBASIC20.32■□□□□ 0.84
COL11A1P12107 AC022898.2-201ENST00000616822 1312 ntBASIC20.32■□□□□ 0.84
COL11A1P12107 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC20.31■□□□□ 0.84
COL11A1P12107 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
COL11A1P12107 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
COL11A1P12107 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
COL11A1P12107 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
COL11A1P12107 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
COL11A1P12107 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
COL11A1P12107 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
COL11A1P12107 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
COL11A1P12107 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
COL11A1P12107 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC20.31■□□□□ 0.84
COL11A1P12107 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
COL11A1P12107 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC20.31■□□□□ 0.84
COL11A1P12107 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC20.31■□□□□ 0.84
COL11A1P12107 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC20.31■□□□□ 0.84
COL11A1P12107 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC20.31■□□□□ 0.84
COL11A1P12107 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
COL11A1P12107 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC20.31■□□□□ 0.84
COL11A1P12107 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC20.31■□□□□ 0.84
COL11A1P12107 AC109462.3-201ENST00000573934 613 ntBASIC20.31■□□□□ 0.84
COL11A1P12107 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC20.31■□□□□ 0.84
COL11A1P12107 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC20.31■□□□□ 0.84
COL11A1P12107 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC20.31■□□□□ 0.84
COL11A1P12107 AP000974.1-201ENST00000623909 2387 ntBASIC20.31■□□□□ 0.84
COL11A1P12107 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
COL11A1P12107 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
COL11A1P12107 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
COL11A1P12107 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
COL11A1P12107 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC20.3■□□□□ 0.84
COL11A1P12107 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
COL11A1P12107 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
COL11A1P12107 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
COL11A1P12107 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
COL11A1P12107 SPDYE21P-201ENST00000413323 827 ntBASIC20.3■□□□□ 0.84
COL11A1P12107 KRT18P3-201ENST00000451602 1288 ntBASIC20.3■□□□□ 0.84
COL11A1P12107 TCAP-202ENST00000578283 583 ntTSL 5 BASIC20.3■□□□□ 0.84
COL11A1P12107 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC20.3■□□□□ 0.84
COL11A1P12107 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC20.3■□□□□ 0.84
COL11A1P12107 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC20.3■□□□□ 0.84
COL11A1P12107 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
COL11A1P12107 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC20.3■□□□□ 0.84
COL11A1P12107 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
COL11A1P12107 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC20.3■□□□□ 0.84
COL11A1P12107 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
COL11A1P12107 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC20.3■□□□□ 0.84
COL11A1P12107 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC20.3■□□□□ 0.84
COL11A1P12107 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC20.3■□□□□ 0.84
COL11A1P12107 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC20.3■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 39 ms