Protein–RNA interactions for Protein: P06400

RB1, Retinoblastoma-associated protein, humanhuman

Predictions only

Length 928 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RB1P06400 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
RB1P06400 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
RB1P06400 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
RB1P06400 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC18.97■□□□□ 0.63
RB1P06400 PPIC-201ENST00000306442 1380 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
RB1P06400 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
RB1P06400 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
RB1P06400 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
RB1P06400 KRT8P47-201ENST00000604727 1398 ntBASIC18.97■□□□□ 0.63
RB1P06400 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
RB1P06400 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
RB1P06400 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
RB1P06400 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC18.97■□□□□ 0.63
RB1P06400 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC18.97■□□□□ 0.63
RB1P06400 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
RB1P06400 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC18.97■□□□□ 0.63
RB1P06400 MKNK2P1-201ENST00000437526 628 ntBASIC18.97■□□□□ 0.63
RB1P06400 CYMP-203ENST00000474680 1263 ntBASIC18.97■□□□□ 0.63
RB1P06400 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC18.97■□□□□ 0.63
RB1P06400 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC18.97■□□□□ 0.63
RB1P06400 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
RB1P06400 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC18.97■□□□□ 0.63
RB1P06400 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC18.97■□□□□ 0.63
RB1P06400 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
RB1P06400 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
RB1P06400 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
RB1P06400 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC18.97■□□□□ 0.63
RB1P06400 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC18.97■□□□□ 0.63
RB1P06400 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
RB1P06400 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
RB1P06400 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC18.97■□□□□ 0.63
RB1P06400 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
RB1P06400 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
RB1P06400 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
RB1P06400 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
RB1P06400 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
RB1P06400 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
RB1P06400 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
RB1P06400 AFG3L1P-217ENST00000557444 2447 ntBASIC18.96■□□□□ 0.63
RB1P06400 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
RB1P06400 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
RB1P06400 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
RB1P06400 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC18.96■□□□□ 0.63
RB1P06400 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC18.96■□□□□ 0.63
RB1P06400 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
RB1P06400 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC18.96■□□□□ 0.63
RB1P06400 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC18.96■□□□□ 0.63
RB1P06400 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC18.96■□□□□ 0.63
RB1P06400 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC18.96■□□□□ 0.63
RB1P06400 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
RB1P06400 PXN-AS1-201ENST00000535200 1170 ntTSL 2 BASIC18.96■□□□□ 0.63
RB1P06400 AC004817.3-201ENST00000602957 2129 ntBASIC18.96■□□□□ 0.63
RB1P06400 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
RB1P06400 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
RB1P06400 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC18.96■□□□□ 0.63
RB1P06400 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC18.96■□□□□ 0.63
RB1P06400 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.63
RB1P06400 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
RB1P06400 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
RB1P06400 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
RB1P06400 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
RB1P06400 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
RB1P06400 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC18.96■□□□□ 0.63
RB1P06400 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC18.96■□□□□ 0.63
RB1P06400 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC18.96■□□□□ 0.62
RB1P06400 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC18.95■□□□□ 0.62
RB1P06400 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC18.95■□□□□ 0.62
RB1P06400 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC18.95■□□□□ 0.62
RB1P06400 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
RB1P06400 AL499627.1-201ENST00000569373 2188 ntBASIC18.95■□□□□ 0.62
RB1P06400 AC010460.3-201ENST00000511359 1579 ntBASIC18.95■□□□□ 0.62
RB1P06400 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
RB1P06400 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC18.95■□□□□ 0.62
RB1P06400 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
RB1P06400 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
RB1P06400 AL020989.1-201ENST00000422979 469 ntBASIC18.95■□□□□ 0.62
RB1P06400 PRSS29P-201ENST00000440800 595 ntBASIC18.95■□□□□ 0.62
RB1P06400 VN2R19P-201ENST00000442399 1052 ntBASIC18.95■□□□□ 0.62
RB1P06400 IQCF3-204ENST00000446775 1241 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
RB1P06400 ARTN-206ENST00000472435 402 ntTSL 3 BASIC18.95■□□□□ 0.62
RB1P06400 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC18.95■□□□□ 0.62
RB1P06400 TRMT112-202ENST00000535126 704 ntTSL 2 BASIC18.95■□□□□ 0.62
RB1P06400 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC18.95■□□□□ 0.62
RB1P06400 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC18.95■□□□□ 0.62
RB1P06400 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC18.95■□□□□ 0.62
RB1P06400 AC073592.5-201ENST00000624854 528 ntBASIC18.95■□□□□ 0.62
RB1P06400 AL049812.1-201ENST00000432563 2267 ntBASIC18.95■□□□□ 0.62
RB1P06400 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC18.95■□□□□ 0.62
RB1P06400 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC18.95■□□□□ 0.62
RB1P06400 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC18.95■□□□□ 0.62
RB1P06400 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
RB1P06400 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
RB1P06400 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
RB1P06400 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC18.94■□□□□ 0.62
RB1P06400 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC18.94■□□□□ 0.62
RB1P06400 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC18.94■□□□□ 0.62
RB1P06400 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
RB1P06400 AC007952.6-201ENST00000573168 2673 ntBASIC18.94■□□□□ 0.62
RB1P06400 AC003957.1-201ENST00000625108 2673 ntBASIC18.94■□□□□ 0.62
RB1P06400 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 82.3 ms