Protein–RNA interactions for Protein: P02458

COL2A1, Collagen alpha-1(II) chain, humanhuman

Predicted RBP Predictions only

Length 1,487 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL2A1P02458 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
COL2A1P02458 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
COL2A1P02458 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC20.89■□□□□ 0.93
COL2A1P02458 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
COL2A1P02458 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.93
COL2A1P02458 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
COL2A1P02458 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
COL2A1P02458 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC20.89■□□□□ 0.93
COL2A1P02458 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC20.89■□□□□ 0.93
COL2A1P02458 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
COL2A1P02458 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC20.89■□□□□ 0.93
COL2A1P02458 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
COL2A1P02458 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC20.89■□□□□ 0.93
COL2A1P02458 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC20.89■□□□□ 0.93
COL2A1P02458 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.93
COL2A1P02458 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
COL2A1P02458 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
COL2A1P02458 KRT18P3-201ENST00000451602 1288 ntBASIC20.88■□□□□ 0.93
COL2A1P02458 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
COL2A1P02458 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC20.88■□□□□ 0.93
COL2A1P02458 AC040169.1-201ENST00000565382 521 ntBASIC20.88■□□□□ 0.93
COL2A1P02458 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC20.88■□□□□ 0.93
COL2A1P02458 AC116407.2-201ENST00000613639 860 ntBASIC20.88■□□□□ 0.93
COL2A1P02458 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC20.88■□□□□ 0.93
COL2A1P02458 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC20.88■□□□□ 0.93
COL2A1P02458 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
COL2A1P02458 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC20.88■□□□□ 0.93
COL2A1P02458 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
COL2A1P02458 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
COL2A1P02458 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC20.88■□□□□ 0.93
COL2A1P02458 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
COL2A1P02458 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
COL2A1P02458 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
COL2A1P02458 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
COL2A1P02458 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC20.88■□□□□ 0.93
COL2A1P02458 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
COL2A1P02458 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
COL2A1P02458 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC20.88■□□□□ 0.93
COL2A1P02458 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC20.88■□□□□ 0.93
COL2A1P02458 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
COL2A1P02458 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
COL2A1P02458 PIGU-202ENST00000374820 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
COL2A1P02458 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC20.88■□□□□ 0.93
COL2A1P02458 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC20.88■□□□□ 0.93
COL2A1P02458 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC20.88■□□□□ 0.93
COL2A1P02458 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
COL2A1P02458 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
COL2A1P02458 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
COL2A1P02458 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
COL2A1P02458 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC20.87■□□□□ 0.93
COL2A1P02458 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
COL2A1P02458 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC20.87■□□□□ 0.93
COL2A1P02458 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC20.87■□□□□ 0.93
COL2A1P02458 GID4-202ENST00000376345 1391 ntTSL 3 BASIC20.87■□□□□ 0.93
COL2A1P02458 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC20.87■□□□□ 0.93
COL2A1P02458 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
COL2A1P02458 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
COL2A1P02458 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC20.87■□□□□ 0.93
COL2A1P02458 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
COL2A1P02458 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
COL2A1P02458 AC018445.3-201ENST00000624177 1945 ntBASIC20.87■□□□□ 0.93
COL2A1P02458 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
COL2A1P02458 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
COL2A1P02458 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC20.87■□□□□ 0.93
COL2A1P02458 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
COL2A1P02458 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC20.87■□□□□ 0.93
COL2A1P02458 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
COL2A1P02458 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
COL2A1P02458 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
COL2A1P02458 AC108751.1-201ENST00000490852 363 ntBASIC20.87■□□□□ 0.93
COL2A1P02458 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC20.87■□□□□ 0.93
COL2A1P02458 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC20.87■□□□□ 0.93
COL2A1P02458 STK25P1-201ENST00000585406 838 ntBASIC20.87■□□□□ 0.93
COL2A1P02458 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
COL2A1P02458 AC100803.2-201ENST00000562459 1963 ntBASIC20.86■□□□□ 0.93
COL2A1P02458 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
COL2A1P02458 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
COL2A1P02458 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
COL2A1P02458 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC20.86■□□□□ 0.93
COL2A1P02458 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC20.86■□□□□ 0.93
COL2A1P02458 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC20.86■□□□□ 0.93
COL2A1P02458 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC20.86■□□□□ 0.93
COL2A1P02458 PC-208ENST00000529047 1607 ntTSL 3 BASIC20.86■□□□□ 0.93
COL2A1P02458 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC20.86■□□□□ 0.93
COL2A1P02458 DHRS7-212ENST00000611054 1321 ntTSL 5 BASIC20.86■□□□□ 0.93
COL2A1P02458 FLYWCH1P1-201ENST00000460917 1874 ntBASIC20.86■□□□□ 0.93
COL2A1P02458 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC20.86■□□□□ 0.93
COL2A1P02458 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
COL2A1P02458 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC20.86■□□□□ 0.93
COL2A1P02458 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
COL2A1P02458 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC20.86■□□□□ 0.93
COL2A1P02458 AC004832.2-201ENST00000426397 482 ntBASIC20.86■□□□□ 0.93
COL2A1P02458 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC20.86■□□□□ 0.93
COL2A1P02458 AC002558.1-201ENST00000488906 803 ntBASIC20.86■□□□□ 0.93
COL2A1P02458 S100A2-206ENST00000497140 697 ntTSL 2 BASIC20.86■□□□□ 0.93
COL2A1P02458 RNA5SP416-201ENST00000516838 111 ntBASIC20.86■□□□□ 0.93
COL2A1P02458 TMED1-207ENST00000591695 809 ntTSL 5 BASIC20.86■□□□□ 0.93
COL2A1P02458 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
COL2A1P02458 AC005593.1-201ENST00000624894 515 ntBASIC20.86■□□□□ 0.93
COL2A1P02458 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC20.86■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 20.4 ms