Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.48
SHOX2O60902 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC18.02■□□□□ 0.48
SHOX2O60902 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC18.02■□□□□ 0.48
SHOX2O60902 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
SHOX2O60902 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC18.02■□□□□ 0.48
SHOX2O60902 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.48
SHOX2O60902 SYNRG-222ENST00000614941 3406 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
SHOX2O60902 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC18.02■□□□□ 0.48
SHOX2O60902 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
SHOX2O60902 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
SHOX2O60902 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
SHOX2O60902 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC18.02■□□□□ 0.48
SHOX2O60902 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC18.02■□□□□ 0.48
SHOX2O60902 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.48
SHOX2O60902 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
SHOX2O60902 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.48
SHOX2O60902 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC18.02■□□□□ 0.48
SHOX2O60902 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
SHOX2O60902 KCNMA1-278ENST00000640141 5705 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.48
SHOX2O60902 ASB6-203ENST00000450050 4535 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
SHOX2O60902 BTN1A1-202ENST00000613186 2266 ntTSL 2 BASIC18.02■□□□□ 0.47
SHOX2O60902 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
SHOX2O60902 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
SHOX2O60902 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.47
SHOX2O60902 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC18.02■□□□□ 0.47
SHOX2O60902 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC18.02■□□□□ 0.47
SHOX2O60902 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.47
SHOX2O60902 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
SHOX2O60902 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC18.01■□□□□ 0.47
SHOX2O60902 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
SHOX2O60902 PLEKHN1-201ENST00000379407 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
SHOX2O60902 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC18.01■□□□□ 0.47
SHOX2O60902 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC18.01■□□□□ 0.47
SHOX2O60902 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC18.01■□□□□ 0.47
SHOX2O60902 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC18.01■□□□□ 0.47
SHOX2O60902 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC18.01■□□□□ 0.47
SHOX2O60902 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC18.01■□□□□ 0.47
SHOX2O60902 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
SHOX2O60902 MYLK2-201ENST00000375985 2787 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
SHOX2O60902 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
SHOX2O60902 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
SHOX2O60902 ENSA-205ENST00000361532 792 ntTSL 2 BASIC18.01■□□□□ 0.47
SHOX2O60902 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC18.01■□□□□ 0.47
SHOX2O60902 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC18.01■□□□□ 0.47
SHOX2O60902 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC18.01■□□□□ 0.47
SHOX2O60902 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
SHOX2O60902 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC18.01■□□□□ 0.47
SHOX2O60902 TMEM57-202ENST00000399766 3294 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
SHOX2O60902 TRIM11-201ENST00000284551 2715 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
SHOX2O60902 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC18.01■□□□□ 0.47
SHOX2O60902 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC18.01■□□□□ 0.47
SHOX2O60902 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC18.01■□□□□ 0.47
SHOX2O60902 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC18.01■□□□□ 0.47
SHOX2O60902 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC18.01■□□□□ 0.47
SHOX2O60902 TRIM46-203ENST00000368383 2666 ntTSL 5 BASIC18.01■□□□□ 0.47
SHOX2O60902 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
SHOX2O60902 WNT2-201ENST00000265441 2907 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
SHOX2O60902 AC024909.3-201ENST00000611513 2257 ntBASIC18.01■□□□□ 0.47
SHOX2O60902 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
SHOX2O60902 AC006019.1-201ENST00000425591 2470 ntTSL 2 BASIC18■□□□□ 0.47
SHOX2O60902 LRRN2-203ENST00000367177 3463 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
SHOX2O60902 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
SHOX2O60902 AQP3-201ENST00000297991 1849 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
SHOX2O60902 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC18■□□□□ 0.47
SHOX2O60902 GCGR-201ENST00000400723 2051 ntAPPRIS P2 TSL 1 (best) BASIC18■□□□□ 0.47
SHOX2O60902 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
SHOX2O60902 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC18■□□□□ 0.47
SHOX2O60902 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC18■□□□□ 0.47
SHOX2O60902 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC18■□□□□ 0.47
SHOX2O60902 BCL2-203ENST00000589955 5011 ntBASIC18■□□□□ 0.47
SHOX2O60902 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC18■□□□□ 0.47
SHOX2O60902 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC18■□□□□ 0.47
SHOX2O60902 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
SHOX2O60902 BX276092.2-201ENST00000417668 665 ntBASIC18■□□□□ 0.47
SHOX2O60902 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC18■□□□□ 0.47
SHOX2O60902 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC18■□□□□ 0.47
SHOX2O60902 IKBKGP1-201ENST00000612193 1073 ntBASIC18■□□□□ 0.47
SHOX2O60902 AL050303.2-201ENST00000619798 666 ntBASIC18■□□□□ 0.47
SHOX2O60902 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC18■□□□□ 0.47
SHOX2O60902 OGG1-206ENST00000349503 1950 ntTSL 5 BASIC18■□□□□ 0.47
SHOX2O60902 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC18■□□□□ 0.47
SHOX2O60902 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC18■□□□□ 0.47
SHOX2O60902 MYB-242ENST00000618728 3545 ntTSL 5 BASIC18■□□□□ 0.47
SHOX2O60902 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC18■□□□□ 0.47
SHOX2O60902 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
SHOX2O60902 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC18■□□□□ 0.47
SHOX2O60902 RAB11FIP2-201ENST00000355624 6061 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
SHOX2O60902 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC18■□□□□ 0.47
SHOX2O60902 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
SHOX2O60902 FBXO41-205ENST00000521871 7336 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
SHOX2O60902 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC18■□□□□ 0.47
SHOX2O60902 RHBDF1P1-201ENST00000427504 1941 ntBASIC18■□□□□ 0.47
SHOX2O60902 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC18■□□□□ 0.47
SHOX2O60902 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
SHOX2O60902 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC18■□□□□ 0.47
SHOX2O60902 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
SHOX2O60902 ASH2L-212ENST00000545394 2808 ntTSL 2 BASIC17.99■□□□□ 0.47
SHOX2O60902 TBX5-203ENST00000405440 2203 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
SHOX2O60902 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
SHOX2O60902 TXNDC11-201ENST00000283033 3140 ntAPPRIS P3 TSL 2 BASIC17.99■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 27.1 ms