Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
LMX1BO60663 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
LMX1BO60663 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC15.85■□□□□ 0.13
LMX1BO60663 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
LMX1BO60663 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC15.85■□□□□ 0.13
LMX1BO60663 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
LMX1BO60663 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC15.85■□□□□ 0.13
LMX1BO60663 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC15.85■□□□□ 0.13
LMX1BO60663 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
LMX1BO60663 AL450487.1-201ENST00000426799 995 ntBASIC15.85■□□□□ 0.13
LMX1BO60663 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC15.85■□□□□ 0.13
LMX1BO60663 KRT18P23-201ENST00000435622 1283 ntBASIC15.85■□□□□ 0.13
LMX1BO60663 HCG4P8-203ENST00000443049 980 ntBASIC15.85■□□□□ 0.13
LMX1BO60663 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC15.85■□□□□ 0.13
LMX1BO60663 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
LMX1BO60663 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC15.85■□□□□ 0.13
LMX1BO60663 AL441883.1-201ENST00000566170 1045 ntBASIC15.85■□□□□ 0.13
LMX1BO60663 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC15.85■□□□□ 0.13
LMX1BO60663 CR769767.2-201ENST00000622735 460 ntBASIC15.85■□□□□ 0.13
LMX1BO60663 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
LMX1BO60663 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
LMX1BO60663 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
LMX1BO60663 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
LMX1BO60663 TMEM255B-202ENST00000375353 6100 ntAPPRIS P2 TSL 1 (best) BASIC15.85■□□□□ 0.13
LMX1BO60663 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
LMX1BO60663 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
LMX1BO60663 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
LMX1BO60663 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC15.85■□□□□ 0.13
LMX1BO60663 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
LMX1BO60663 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
LMX1BO60663 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC15.84■□□□□ 0.13
LMX1BO60663 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC15.84■□□□□ 0.13
LMX1BO60663 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
LMX1BO60663 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC15.84■□□□□ 0.13
LMX1BO60663 AC106820.2-201ENST00000563775 3264 ntBASIC15.84■□□□□ 0.13
LMX1BO60663 HR-202ENST00000381418 6336 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
LMX1BO60663 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
LMX1BO60663 MIR149-201ENST00000384879 89 ntBASIC15.84■□□□□ 0.13
LMX1BO60663 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
LMX1BO60663 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
LMX1BO60663 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC15.84■□□□□ 0.13
LMX1BO60663 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC15.84■□□□□ 0.13
LMX1BO60663 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC15.84■□□□□ 0.13
LMX1BO60663 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC15.84■□□□□ 0.13
LMX1BO60663 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC15.84■□□□□ 0.13
LMX1BO60663 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC15.84■□□□□ 0.13
LMX1BO60663 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC15.84■□□□□ 0.13
LMX1BO60663 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
LMX1BO60663 AC005332.1-201ENST00000577698 1310 ntBASIC15.84■□□□□ 0.13
LMX1BO60663 AC139713.2-201ENST00000641328 2723 ntBASIC15.84■□□□□ 0.13
LMX1BO60663 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC15.84■□□□□ 0.13
LMX1BO60663 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC15.84■□□□□ 0.13
LMX1BO60663 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC15.84■□□□□ 0.13
LMX1BO60663 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC15.84■□□□□ 0.13
LMX1BO60663 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
LMX1BO60663 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC15.84■□□□□ 0.13
LMX1BO60663 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC15.84■□□□□ 0.13
LMX1BO60663 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
LMX1BO60663 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC15.84■□□□□ 0.13
LMX1BO60663 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC15.83■□□□□ 0.13
LMX1BO60663 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC15.83■□□□□ 0.13
LMX1BO60663 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC15.83■□□□□ 0.13
LMX1BO60663 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.13
LMX1BO60663 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC15.83■□□□□ 0.13
LMX1BO60663 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC15.83■□□□□ 0.13
LMX1BO60663 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
LMX1BO60663 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC15.83■□□□□ 0.13
LMX1BO60663 MAN2A1-201ENST00000261483 4667 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
LMX1BO60663 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC15.83■□□□□ 0.12
LMX1BO60663 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
LMX1BO60663 HTR7P1-202ENST00000624664 4411 ntBASIC15.83■□□□□ 0.12
LMX1BO60663 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
LMX1BO60663 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
LMX1BO60663 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC15.83■□□□□ 0.12
LMX1BO60663 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
LMX1BO60663 AP000523.1-201ENST00000398242 1049 ntBASIC15.83■□□□□ 0.12
LMX1BO60663 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC15.83■□□□□ 0.12
LMX1BO60663 DUSP5P1-201ENST00000441325 1139 ntBASIC15.83■□□□□ 0.12
LMX1BO60663 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC15.83■□□□□ 0.12
LMX1BO60663 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
LMX1BO60663 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC15.83■□□□□ 0.12
LMX1BO60663 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC15.83■□□□□ 0.12
LMX1BO60663 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC15.83■□□□□ 0.12
LMX1BO60663 AC069148.1-201ENST00000608741 768 ntBASIC15.83■□□□□ 0.12
LMX1BO60663 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC15.83■□□□□ 0.12
LMX1BO60663 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC15.83■□□□□ 0.12
LMX1BO60663 AC116407.4-201ENST00000623319 1061 ntBASIC15.83■□□□□ 0.12
LMX1BO60663 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
LMX1BO60663 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC15.83■□□□□ 0.12
LMX1BO60663 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC15.83■□□□□ 0.12
LMX1BO60663 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC15.83■□□□□ 0.12
LMX1BO60663 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
LMX1BO60663 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC15.83■□□□□ 0.12
LMX1BO60663 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.12
LMX1BO60663 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC15.83■□□□□ 0.12
LMX1BO60663 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC15.83■□□□□ 0.12
LMX1BO60663 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC15.83■□□□□ 0.12
LMX1BO60663 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
LMX1BO60663 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
LMX1BO60663 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC15.83■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 25 ms