Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 AC145285.3-201ENST00000564603 959 ntBASIC22.64■■□□□ 1.21
NPHP1O15259 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC22.64■■□□□ 1.21
NPHP1O15259 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC22.64■■□□□ 1.21
NPHP1O15259 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
NPHP1O15259 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC22.64■■□□□ 1.21
NPHP1O15259 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
NPHP1O15259 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
NPHP1O15259 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
NPHP1O15259 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
NPHP1O15259 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC22.63■■□□□ 1.21
NPHP1O15259 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC22.63■■□□□ 1.21
NPHP1O15259 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC22.63■■□□□ 1.21
NPHP1O15259 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
NPHP1O15259 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
NPHP1O15259 AQP5-201ENST00000293599 1450 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
NPHP1O15259 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC22.63■■□□□ 1.21
NPHP1O15259 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
NPHP1O15259 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC22.63■■□□□ 1.21
NPHP1O15259 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
NPHP1O15259 C11orf74-203ENST00000446510 1062 ntAPPRIS P3 TSL 5 BASIC22.63■■□□□ 1.21
NPHP1O15259 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC22.63■■□□□ 1.21
NPHP1O15259 IGHV3-22-201ENST00000520721 359 ntBASIC22.63■■□□□ 1.21
NPHP1O15259 FAM197Y3-203ENST00000618346 717 ntBASIC22.63■■□□□ 1.21
NPHP1O15259 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
NPHP1O15259 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC22.63■■□□□ 1.21
NPHP1O15259 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
NPHP1O15259 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
NPHP1O15259 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
NPHP1O15259 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC22.62■■□□□ 1.21
NPHP1O15259 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC22.62■■□□□ 1.21
NPHP1O15259 BICRA-201ENST00000396720 5739 ntAPPRIS P2 TSL 5 BASIC22.62■■□□□ 1.21
NPHP1O15259 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC22.62■■□□□ 1.21
NPHP1O15259 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC22.62■■□□□ 1.21
NPHP1O15259 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
NPHP1O15259 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC22.62■■□□□ 1.21
NPHP1O15259 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC22.62■■□□□ 1.21
NPHP1O15259 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC22.62■■□□□ 1.21
NPHP1O15259 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
NPHP1O15259 AL591424.1-201ENST00000442569 1213 ntBASIC22.62■■□□□ 1.21
NPHP1O15259 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC22.62■■□□□ 1.21
NPHP1O15259 CD63-204ENST00000546939 779 ntTSL 3 BASIC22.62■■□□□ 1.21
NPHP1O15259 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC22.62■■□□□ 1.21
NPHP1O15259 ARMC7-203ENST00000581078 1002 ntTSL 2 BASIC22.62■■□□□ 1.21
NPHP1O15259 AC010327.4-202ENST00000591484 748 ntBASIC22.62■■□□□ 1.21
NPHP1O15259 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC22.62■■□□□ 1.21
NPHP1O15259 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
NPHP1O15259 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC22.62■■□□□ 1.21
NPHP1O15259 PCDH7-201ENST00000361762 6403 ntAPPRIS P3 TSL 1 (best) BASIC22.62■■□□□ 1.21
NPHP1O15259 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
NPHP1O15259 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
NPHP1O15259 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
NPHP1O15259 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC22.61■■□□□ 1.21
NPHP1O15259 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC22.61■■□□□ 1.21
NPHP1O15259 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC22.61■■□□□ 1.21
NPHP1O15259 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC22.61■■□□□ 1.21
NPHP1O15259 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
NPHP1O15259 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC22.61■■□□□ 1.21
NPHP1O15259 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC22.61■■□□□ 1.21
NPHP1O15259 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC22.61■■□□□ 1.21
NPHP1O15259 BORCS8-206ENST00000585679 801 ntTSL 3 BASIC22.61■■□□□ 1.21
NPHP1O15259 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC22.61■■□□□ 1.21
NPHP1O15259 Z83851.2-201ENST00000609564 659 ntBASIC22.61■■□□□ 1.21
NPHP1O15259 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC22.61■■□□□ 1.21
NPHP1O15259 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC22.61■■□□□ 1.21
NPHP1O15259 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC22.61■■□□□ 1.21
NPHP1O15259 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC22.61■■□□□ 1.21
NPHP1O15259 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
NPHP1O15259 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC22.61■■□□□ 1.21
NPHP1O15259 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC22.61■■□□□ 1.21
NPHP1O15259 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC22.61■■□□□ 1.21
NPHP1O15259 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC22.61■■□□□ 1.21
NPHP1O15259 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC22.6■■□□□ 1.21
NPHP1O15259 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
NPHP1O15259 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC22.6■■□□□ 1.21
NPHP1O15259 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC22.6■■□□□ 1.21
NPHP1O15259 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
NPHP1O15259 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
NPHP1O15259 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
NPHP1O15259 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC22.6■■□□□ 1.21
NPHP1O15259 YAP1-209ENST00000537274 5350 ntAPPRIS ALT2 TSL 5 BASIC22.6■■□□□ 1.21
NPHP1O15259 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC22.6■■□□□ 1.21
NPHP1O15259 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC22.6■■□□□ 1.21
NPHP1O15259 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
NPHP1O15259 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
NPHP1O15259 RPS8P6-201ENST00000426177 609 ntBASIC22.6■■□□□ 1.21
NPHP1O15259 KRT18P3-201ENST00000451602 1288 ntBASIC22.6■■□□□ 1.21
NPHP1O15259 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC22.6■■□□□ 1.21
NPHP1O15259 RNA5SP415-201ENST00000517246 115 ntBASIC22.6■■□□□ 1.21
NPHP1O15259 MSRA-206ENST00000521209 814 ntTSL 3 BASIC22.6■■□□□ 1.21
NPHP1O15259 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC22.6■■□□□ 1.21
NPHP1O15259 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC22.6■■□□□ 1.21
NPHP1O15259 MIR3687-2-201ENST00000577708 61 ntBASIC22.6■■□□□ 1.21
NPHP1O15259 MIR3687-1-201ENST00000614492 61 ntBASIC22.6■■□□□ 1.21
NPHP1O15259 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC22.6■■□□□ 1.21
NPHP1O15259 AL139288.1-201ENST00000623748 933 ntBASIC22.6■■□□□ 1.21
NPHP1O15259 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC22.6■■□□□ 1.21
NPHP1O15259 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC22.6■■□□□ 1.21
NPHP1O15259 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
NPHP1O15259 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC22.6■■□□□ 1.21
NPHP1O15259 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
Retrieved 100 of 98,524 protein–RNA pairs in 38.5 ms