Protein–RNA interactions for Protein: O00337

SLC28A1, Sodium/nucleoside cotransporter 1, humanhuman

Predictions only

Length 649 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC28A1O00337 ZNF512B-201ENST00000369888 5919 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SLC28A1O00337 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
SLC28A1O00337 CACNA1A-214ENST00000614285 8410 ntAPPRIS ALT2 TSL 5 BASIC17.36■□□□□ 0.37
SLC28A1O00337 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
SLC28A1O00337 CEP83-AS1-201ENST00000623122 2482 ntBASIC17.36■□□□□ 0.37
SLC28A1O00337 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SLC28A1O00337 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
SLC28A1O00337 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC17.36■□□□□ 0.37
SLC28A1O00337 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
SLC28A1O00337 PVRIG2P-201ENST00000435460 978 ntBASIC17.36■□□□□ 0.37
SLC28A1O00337 TSPY15P-201ENST00000457163 923 ntBASIC17.36■□□□□ 0.37
SLC28A1O00337 ECEL1P2-202ENST00000465689 757 ntBASIC17.36■□□□□ 0.37
SLC28A1O00337 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC17.36■□□□□ 0.37
SLC28A1O00337 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC17.36■□□□□ 0.37
SLC28A1O00337 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC17.36■□□□□ 0.37
SLC28A1O00337 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SLC28A1O00337 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
SLC28A1O00337 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SLC28A1O00337 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
SLC28A1O00337 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
SLC28A1O00337 PBK-203ENST00000522944 1499 ntTSL 2 BASIC17.36■□□□□ 0.37
SLC28A1O00337 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
SLC28A1O00337 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SLC28A1O00337 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC17.36■□□□□ 0.37
SLC28A1O00337 ZNF710-201ENST00000268154 4617 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
SLC28A1O00337 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SLC28A1O00337 DENND6B-201ENST00000413817 4939 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SLC28A1O00337 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC17.36■□□□□ 0.37
SLC28A1O00337 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SLC28A1O00337 SIRPAP1-201ENST00000448467 1770 ntBASIC17.35■□□□□ 0.37
SLC28A1O00337 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC17.35■□□□□ 0.37
SLC28A1O00337 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC17.35■□□□□ 0.37
SLC28A1O00337 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
SLC28A1O00337 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
SLC28A1O00337 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC17.35■□□□□ 0.37
SLC28A1O00337 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SLC28A1O00337 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SLC28A1O00337 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC17.35■□□□□ 0.37
SLC28A1O00337 Telomerase-vert.1-201ENST00000363312 438 ntBASIC17.35■□□□□ 0.37
SLC28A1O00337 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
SLC28A1O00337 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC17.35■□□□□ 0.37
SLC28A1O00337 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
SLC28A1O00337 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC17.35■□□□□ 0.37
SLC28A1O00337 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC17.35■□□□□ 0.37
SLC28A1O00337 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC17.35■□□□□ 0.37
SLC28A1O00337 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC17.35■□□□□ 0.37
SLC28A1O00337 FAM87A-204ENST00000613235 858 ntBASIC17.35■□□□□ 0.37
SLC28A1O00337 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC17.35■□□□□ 0.37
SLC28A1O00337 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC17.35■□□□□ 0.37
SLC28A1O00337 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
SLC28A1O00337 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC17.35■□□□□ 0.37
SLC28A1O00337 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
SLC28A1O00337 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
SLC28A1O00337 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC17.35■□□□□ 0.37
SLC28A1O00337 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
SLC28A1O00337 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
SLC28A1O00337 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
SLC28A1O00337 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SLC28A1O00337 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SLC28A1O00337 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
SLC28A1O00337 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC17.35■□□□□ 0.37
SLC28A1O00337 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
SLC28A1O00337 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC17.35■□□□□ 0.37
SLC28A1O00337 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
SLC28A1O00337 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC17.35■□□□□ 0.37
SLC28A1O00337 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC17.34■□□□□ 0.37
SLC28A1O00337 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC17.34■□□□□ 0.37
SLC28A1O00337 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
SLC28A1O00337 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
SLC28A1O00337 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
SLC28A1O00337 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
SLC28A1O00337 PROSER1-201ENST00000352251 5168 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
SLC28A1O00337 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC17.34■□□□□ 0.37
SLC28A1O00337 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
SLC28A1O00337 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
SLC28A1O00337 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
SLC28A1O00337 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC17.34■□□□□ 0.37
SLC28A1O00337 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC17.34■□□□□ 0.37
SLC28A1O00337 EML3-212ENST00000494176 2901 ntTSL 2 BASIC17.34■□□□□ 0.37
SLC28A1O00337 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC17.34■□□□□ 0.37
SLC28A1O00337 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC17.34■□□□□ 0.37
SLC28A1O00337 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC17.34■□□□□ 0.37
SLC28A1O00337 EML3-216ENST00000529309 2909 ntTSL 2 BASIC17.34■□□□□ 0.37
SLC28A1O00337 RNF217-211ENST00000560949 5145 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
SLC28A1O00337 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC17.34■□□□□ 0.37
SLC28A1O00337 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
SLC28A1O00337 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC17.34■□□□□ 0.37
SLC28A1O00337 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
SLC28A1O00337 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
SLC28A1O00337 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
SLC28A1O00337 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC17.34■□□□□ 0.37
SLC28A1O00337 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC17.34■□□□□ 0.37
SLC28A1O00337 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
SLC28A1O00337 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC17.33■□□□□ 0.37
SLC28A1O00337 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
SLC28A1O00337 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.37
SLC28A1O00337 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC17.33■□□□□ 0.37
SLC28A1O00337 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC17.33■□□□□ 0.37
SLC28A1O00337 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
SLC28A1O00337 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 27.5 ms