Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC30.99■■■□□ 2.55
CCDC88BA6NC98 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC30.99■■■□□ 2.55
CCDC88BA6NC98 RPS15-207ENST00000591032 550 ntTSL 3 BASIC30.99■■■□□ 2.55
CCDC88BA6NC98 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC30.99■■■□□ 2.55
CCDC88BA6NC98 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC30.99■■■□□ 2.55
CCDC88BA6NC98 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC30.99■■■□□ 2.55
CCDC88BA6NC98 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC30.99■■■□□ 2.55
CCDC88BA6NC98 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC30.99■■■□□ 2.55
CCDC88BA6NC98 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC30.99■■■□□ 2.55
CCDC88BA6NC98 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC30.99■■■□□ 2.55
CCDC88BA6NC98 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC30.98■■■□□ 2.55
CCDC88BA6NC98 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC30.98■■■□□ 2.55
CCDC88BA6NC98 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC30.98■■■□□ 2.55
CCDC88BA6NC98 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC30.98■■■□□ 2.55
CCDC88BA6NC98 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC30.98■■■□□ 2.55
CCDC88BA6NC98 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC30.98■■■□□ 2.55
CCDC88BA6NC98 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC30.98■■■□□ 2.55
CCDC88BA6NC98 AC254562.1-201ENST00000417586 456 ntBASIC30.98■■■□□ 2.55
CCDC88BA6NC98 CYMP-203ENST00000474680 1263 ntBASIC30.98■■■□□ 2.55
CCDC88BA6NC98 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC30.98■■■□□ 2.55
CCDC88BA6NC98 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC30.98■■■□□ 2.55
CCDC88BA6NC98 GID4-202ENST00000376345 1391 ntTSL 3 BASIC30.98■■■□□ 2.55
CCDC88BA6NC98 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC30.98■■■□□ 2.55
CCDC88BA6NC98 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC30.98■■■□□ 2.55
CCDC88BA6NC98 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC30.98■■■□□ 2.55
CCDC88BA6NC98 KRT18P28-201ENST00000453838 1332 ntBASIC30.98■■■□□ 2.55
CCDC88BA6NC98 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC30.97■■■□□ 2.55
CCDC88BA6NC98 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC30.97■■■□□ 2.55
CCDC88BA6NC98 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC30.97■■■□□ 2.55
CCDC88BA6NC98 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC30.97■■■□□ 2.55
CCDC88BA6NC98 AL669831.5-202ENST00000457084 566 ntTSL 4 BASIC30.97■■■□□ 2.55
CCDC88BA6NC98 MIR4751-201ENST00000578027 74 ntBASIC30.97■■■□□ 2.55
CCDC88BA6NC98 AC027612.4-201ENST00000605371 583 ntBASIC30.97■■■□□ 2.55
CCDC88BA6NC98 AL805961.1-202ENST00000641562 540 ntBASIC30.97■■■□□ 2.55
CCDC88BA6NC98 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC30.97■■■□□ 2.55
CCDC88BA6NC98 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC30.96■■■□□ 2.55
CCDC88BA6NC98 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC30.96■■■□□ 2.55
CCDC88BA6NC98 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC30.96■■■□□ 2.55
CCDC88BA6NC98 CRYGEP-201ENST00000412192 528 ntBASIC30.96■■■□□ 2.55
CCDC88BA6NC98 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC30.96■■■□□ 2.55
CCDC88BA6NC98 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC30.96■■■□□ 2.55
CCDC88BA6NC98 AL078644.1-201ENST00000609881 752 ntBASIC30.96■■■□□ 2.55
CCDC88BA6NC98 C20orf181-201ENST00000623918 480 ntBASIC30.96■■■□□ 2.55
CCDC88BA6NC98 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC30.96■■■□□ 2.55
CCDC88BA6NC98 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC30.96■■■□□ 2.55
CCDC88BA6NC98 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC30.96■■■□□ 2.55
CCDC88BA6NC98 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC30.96■■■□□ 2.55
CCDC88BA6NC98 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC30.96■■■□□ 2.55
CCDC88BA6NC98 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC30.96■■■□□ 2.55
CCDC88BA6NC98 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC30.96■■■□□ 2.55
CCDC88BA6NC98 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC30.96■■■□□ 2.55
CCDC88BA6NC98 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC30.96■■■□□ 2.55
CCDC88BA6NC98 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC30.95■■■□□ 2.55
CCDC88BA6NC98 METTL21A-202ENST00000406927 1103 ntAPPRIS P1 TSL 1 (best) BASIC30.95■■■□□ 2.55
CCDC88BA6NC98 VN2R19P-201ENST00000442399 1052 ntBASIC30.95■■■□□ 2.55
CCDC88BA6NC98 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC30.95■■■□□ 2.55
CCDC88BA6NC98 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC30.95■■■□□ 2.55
CCDC88BA6NC98 AC010507.1-201ENST00000633895 436 ntBASIC30.95■■■□□ 2.55
CCDC88BA6NC98 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC30.95■■■□□ 2.55
CCDC88BA6NC98 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC30.95■■■□□ 2.55
CCDC88BA6NC98 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC30.95■■■□□ 2.55
CCDC88BA6NC98 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC30.95■■■□□ 2.54
CCDC88BA6NC98 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC30.95■■■□□ 2.54
CCDC88BA6NC98 CEMP1-201ENST00000565480 519 ntAPPRIS ALT2 TSL 3 BASIC30.95■■■□□ 2.54
CCDC88BA6NC98 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC30.95■■■□□ 2.54
CCDC88BA6NC98 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC30.95■■■□□ 2.54
CCDC88BA6NC98 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC30.94■■■□□ 2.54
CCDC88BA6NC98 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC30.94■■■□□ 2.54
CCDC88BA6NC98 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC30.94■■■□□ 2.54
CCDC88BA6NC98 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC30.94■■■□□ 2.54
CCDC88BA6NC98 GPR89P-201ENST00000407924 1495 ntBASIC30.94■■■□□ 2.54
CCDC88BA6NC98 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC30.94■■■□□ 2.54
CCDC88BA6NC98 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC30.94■■■□□ 2.54
CCDC88BA6NC98 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC30.94■■■□□ 2.54
CCDC88BA6NC98 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC30.94■■■□□ 2.54
CCDC88BA6NC98 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC30.94■■■□□ 2.54
CCDC88BA6NC98 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC30.94■■■□□ 2.54
CCDC88BA6NC98 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC30.94■■■□□ 2.54
CCDC88BA6NC98 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC30.94■■■□□ 2.54
CCDC88BA6NC98 POLD4-207ENST00000531239 584 ntTSL 2 BASIC30.94■■■□□ 2.54
CCDC88BA6NC98 AC018558.2-201ENST00000566562 480 ntTSL 3 BASIC30.94■■■□□ 2.54
CCDC88BA6NC98 PYCR1-207ENST00000577756 1144 ntTSL 2 BASIC30.94■■■□□ 2.54
CCDC88BA6NC98 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC30.93■■■□□ 2.54
CCDC88BA6NC98 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC30.93■■■□□ 2.54
CCDC88BA6NC98 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC30.93■■■□□ 2.54
CCDC88BA6NC98 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC30.93■■■□□ 2.54
CCDC88BA6NC98 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC30.93■■■□□ 2.54
CCDC88BA6NC98 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC30.93■■■□□ 2.54
CCDC88BA6NC98 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC30.93■■■□□ 2.54
CCDC88BA6NC98 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC30.93■■■□□ 2.54
CCDC88BA6NC98 TMEM179B-201ENST00000333449 1023 ntAPPRIS P1 TSL 1 (best) BASIC30.93■■■□□ 2.54
CCDC88BA6NC98 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC30.93■■■□□ 2.54
CCDC88BA6NC98 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC30.93■■■□□ 2.54
CCDC88BA6NC98 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC30.93■■■□□ 2.54
CCDC88BA6NC98 PRSS29P-201ENST00000440800 595 ntBASIC30.93■■■□□ 2.54
CCDC88BA6NC98 AC119403.1-201ENST00000520090 776 ntTSL 5 BASIC30.93■■■□□ 2.54
CCDC88BA6NC98 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC30.93■■■□□ 2.54
CCDC88BA6NC98 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC30.93■■■□□ 2.54
CCDC88BA6NC98 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC30.93■■■□□ 2.54
CCDC88BA6NC98 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC30.93■■■□□ 2.54
Retrieved 100 of 98,524 protein–RNA pairs in 36.7 ms