Protein–RNA interactions for Protein: A0PJX4

SHISA3, Protein shisa-3 homolog, humanhuman

Predictions only

Length 238 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHISA3A0PJX4 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
SHISA3A0PJX4 CEACAM3-201ENST00000344550 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
SHISA3A0PJX4 MPV17L-202ENST00000396385 1037 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
SHISA3A0PJX4 AP003097.1-201ENST00000530657 1135 ntBASIC15.71■□□□□ 0.11
SHISA3A0PJX4 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC15.71■□□□□ 0.11
SHISA3A0PJX4 MIR4674-201ENST00000582457 87 ntBASIC15.71■□□□□ 0.11
SHISA3A0PJX4 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC15.71■□□□□ 0.11
SHISA3A0PJX4 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC15.71■□□□□ 0.11
SHISA3A0PJX4 DOC2GP-204ENST00000639052 2548 ntBASIC15.71■□□□□ 0.11
SHISA3A0PJX4 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC15.71■□□□□ 0.11
SHISA3A0PJX4 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
SHISA3A0PJX4 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC15.71■□□□□ 0.11
SHISA3A0PJX4 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.1
SHISA3A0PJX4 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
SHISA3A0PJX4 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
SHISA3A0PJX4 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC15.71■□□□□ 0.1
SHISA3A0PJX4 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC15.71■□□□□ 0.1
SHISA3A0PJX4 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC15.71■□□□□ 0.1
SHISA3A0PJX4 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
SHISA3A0PJX4 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC15.71■□□□□ 0.1
SHISA3A0PJX4 GAS7-213ENST00000580865 2417 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
SHISA3A0PJX4 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
SHISA3A0PJX4 REXO1L11P-201ENST00000620964 1927 ntBASIC15.7■□□□□ 0.1
SHISA3A0PJX4 SLC4A5-203ENST00000377632 3123 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
SHISA3A0PJX4 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC15.7■□□□□ 0.1
SHISA3A0PJX4 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
SHISA3A0PJX4 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
SHISA3A0PJX4 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC15.7■□□□□ 0.1
SHISA3A0PJX4 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
SHISA3A0PJX4 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC15.7■□□□□ 0.1
SHISA3A0PJX4 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
SHISA3A0PJX4 PLBD2-201ENST00000280800 4800 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
SHISA3A0PJX4 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC15.7■□□□□ 0.1
SHISA3A0PJX4 SBSPON-201ENST00000297354 3801 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
SHISA3A0PJX4 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
SHISA3A0PJX4 GAS7-202ENST00000396115 929 ntTSL 5 BASIC15.7■□□□□ 0.1
SHISA3A0PJX4 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC15.7■□□□□ 0.1
SHISA3A0PJX4 KIRREL3-AS3-201ENST00000404882 831 ntBASIC15.7■□□□□ 0.1
SHISA3A0PJX4 KRT17P3-201ENST00000420566 1262 ntBASIC15.7■□□□□ 0.1
SHISA3A0PJX4 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC15.7■□□□□ 0.1
SHISA3A0PJX4 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
SHISA3A0PJX4 FDX2-207ENST00000494368 584 ntTSL 4 BASIC15.7■□□□□ 0.1
SHISA3A0PJX4 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC15.7■□□□□ 0.1
SHISA3A0PJX4 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC15.7■□□□□ 0.1
SHISA3A0PJX4 AC026271.3-201ENST00000571884 352 ntBASIC15.7■□□□□ 0.1
SHISA3A0PJX4 MIR3180-5-201ENST00000583743 153 ntBASIC15.7■□□□□ 0.1
SHISA3A0PJX4 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
SHISA3A0PJX4 AL109923.1-201ENST00000618799 583 ntBASIC15.7■□□□□ 0.1
SHISA3A0PJX4 SLC39A8-201ENST00000356736 3144 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
SHISA3A0PJX4 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
SHISA3A0PJX4 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
SHISA3A0PJX4 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC15.7■□□□□ 0.1
SHISA3A0PJX4 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC15.7■□□□□ 0.1
SHISA3A0PJX4 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC15.7■□□□□ 0.1
SHISA3A0PJX4 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC15.7■□□□□ 0.1
SHISA3A0PJX4 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
SHISA3A0PJX4 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
SHISA3A0PJX4 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC15.7■□□□□ 0.1
SHISA3A0PJX4 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC15.7■□□□□ 0.1
SHISA3A0PJX4 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC15.7■□□□□ 0.1
SHISA3A0PJX4 TLE4-205ENST00000376544 4871 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
SHISA3A0PJX4 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC15.69■□□□□ 0.1
SHISA3A0PJX4 ZNF710-201ENST00000268154 4617 ntAPPRIS P1 TSL 2 BASIC15.69■□□□□ 0.1
SHISA3A0PJX4 KRT16P1-201ENST00000399124 1418 ntBASIC15.69■□□□□ 0.1
SHISA3A0PJX4 CES3-203ENST00000543856 3178 ntTSL 2 BASIC15.69■□□□□ 0.1
SHISA3A0PJX4 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
SHISA3A0PJX4 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
SHISA3A0PJX4 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
SHISA3A0PJX4 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
SHISA3A0PJX4 MYB-209ENST00000442647 3304 ntAPPRIS ALT1 TSL 1 (best) BASIC15.69■□□□□ 0.1
SHISA3A0PJX4 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
SHISA3A0PJX4 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
SHISA3A0PJX4 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC15.69■□□□□ 0.1
SHISA3A0PJX4 MESTP1-201ENST00000404287 994 ntBASIC15.69■□□□□ 0.1
SHISA3A0PJX4 B3GAT3P1-201ENST00000471720 806 ntBASIC15.69■□□□□ 0.1
SHISA3A0PJX4 AP002982.1-201ENST00000492365 877 ntBASIC15.69■□□□□ 0.1
SHISA3A0PJX4 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC15.69■□□□□ 0.1
SHISA3A0PJX4 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC15.69■□□□□ 0.1
SHISA3A0PJX4 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC15.69■□□□□ 0.1
SHISA3A0PJX4 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
SHISA3A0PJX4 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC15.69■□□□□ 0.1
SHISA3A0PJX4 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
SHISA3A0PJX4 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
SHISA3A0PJX4 NSFL1C-201ENST00000216879 3568 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
SHISA3A0PJX4 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC15.69■□□□□ 0.1
SHISA3A0PJX4 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
SHISA3A0PJX4 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC15.69■□□□□ 0.1
SHISA3A0PJX4 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC15.69■□□□□ 0.1
SHISA3A0PJX4 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC15.69■□□□□ 0.1
SHISA3A0PJX4 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
SHISA3A0PJX4 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC15.69■□□□□ 0.1
SHISA3A0PJX4 AMOTL2-211ENST00000513145 2653 ntAPPRIS ALT1 TSL 1 (best) BASIC15.69■□□□□ 0.1
SHISA3A0PJX4 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
SHISA3A0PJX4 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
SHISA3A0PJX4 PCNP-201ENST00000265260 2342 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
SHISA3A0PJX4 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
SHISA3A0PJX4 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
SHISA3A0PJX4 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
SHISA3A0PJX4 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
SHISA3A0PJX4 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC15.68■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 29.2 ms