Protein–RNA interactions for Protein: A0A1B0GU29

SMIM28, Small integral membrane protein 28, humanhuman

Predictions only

Length 152 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMIM28A0A1B0GU29 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC19.25■□□□□ 0.67
SMIM28A0A1B0GU29 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
SMIM28A0A1B0GU29 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SMIM28A0A1B0GU29 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
SMIM28A0A1B0GU29 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
SMIM28A0A1B0GU29 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
SMIM28A0A1B0GU29 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
SMIM28A0A1B0GU29 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
SMIM28A0A1B0GU29 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
SMIM28A0A1B0GU29 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC19.25■□□□□ 0.67
SMIM28A0A1B0GU29 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC19.25■□□□□ 0.67
SMIM28A0A1B0GU29 AC010460.3-201ENST00000511359 1579 ntBASIC19.25■□□□□ 0.67
SMIM28A0A1B0GU29 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
SMIM28A0A1B0GU29 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC19.25■□□□□ 0.67
SMIM28A0A1B0GU29 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SMIM28A0A1B0GU29 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC19.25■□□□□ 0.67
SMIM28A0A1B0GU29 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SMIM28A0A1B0GU29 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC19.25■□□□□ 0.67
SMIM28A0A1B0GU29 AC106795.1-205ENST00000512851 1056 ntBASIC19.25■□□□□ 0.67
SMIM28A0A1B0GU29 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
SMIM28A0A1B0GU29 PDCD2L-203ENST00000587065 492 ntTSL 3 BASIC19.25■□□□□ 0.67
SMIM28A0A1B0GU29 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC19.25■□□□□ 0.67
SMIM28A0A1B0GU29 AC008608.2-201ENST00000606089 416 ntBASIC19.25■□□□□ 0.67
SMIM28A0A1B0GU29 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
SMIM28A0A1B0GU29 TP73-AS1-207ENST00000624167 988 ntBASIC19.25■□□□□ 0.67
SMIM28A0A1B0GU29 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SMIM28A0A1B0GU29 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SMIM28A0A1B0GU29 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC19.25■□□□□ 0.67
SMIM28A0A1B0GU29 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
SMIM28A0A1B0GU29 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC19.25■□□□□ 0.67
SMIM28A0A1B0GU29 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SMIM28A0A1B0GU29 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC19.25■□□□□ 0.67
SMIM28A0A1B0GU29 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC19.25■□□□□ 0.67
SMIM28A0A1B0GU29 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
SMIM28A0A1B0GU29 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC19.25■□□□□ 0.67
SMIM28A0A1B0GU29 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC19.25■□□□□ 0.67
SMIM28A0A1B0GU29 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC19.25■□□□□ 0.67
SMIM28A0A1B0GU29 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SMIM28A0A1B0GU29 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
SMIM28A0A1B0GU29 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SMIM28A0A1B0GU29 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
SMIM28A0A1B0GU29 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC19.24■□□□□ 0.67
SMIM28A0A1B0GU29 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SMIM28A0A1B0GU29 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SMIM28A0A1B0GU29 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SMIM28A0A1B0GU29 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SMIM28A0A1B0GU29 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SMIM28A0A1B0GU29 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SMIM28A0A1B0GU29 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
SMIM28A0A1B0GU29 FAM220CP-201ENST00000395253 831 ntBASIC19.24■□□□□ 0.67
SMIM28A0A1B0GU29 MRPL3P1-201ENST00000400109 1033 ntBASIC19.24■□□□□ 0.67
SMIM28A0A1B0GU29 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC19.24■□□□□ 0.67
SMIM28A0A1B0GU29 RBSN-204ENST00000449050 903 ntTSL 2 BASIC19.24■□□□□ 0.67
SMIM28A0A1B0GU29 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
SMIM28A0A1B0GU29 SLC25A6P4-201ENST00000586535 553 ntBASIC19.24■□□□□ 0.67
SMIM28A0A1B0GU29 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC19.24■□□□□ 0.67
SMIM28A0A1B0GU29 AL355877.3-201ENST00000622820 899 ntBASIC19.24■□□□□ 0.67
SMIM28A0A1B0GU29 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC19.24■□□□□ 0.67
SMIM28A0A1B0GU29 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SMIM28A0A1B0GU29 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
SMIM28A0A1B0GU29 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC19.24■□□□□ 0.67
SMIM28A0A1B0GU29 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC19.24■□□□□ 0.67
SMIM28A0A1B0GU29 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
SMIM28A0A1B0GU29 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC19.24■□□□□ 0.67
SMIM28A0A1B0GU29 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC19.24■□□□□ 0.67
SMIM28A0A1B0GU29 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SMIM28A0A1B0GU29 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
SMIM28A0A1B0GU29 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
SMIM28A0A1B0GU29 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
SMIM28A0A1B0GU29 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
SMIM28A0A1B0GU29 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
SMIM28A0A1B0GU29 CD151-203ENST00000397421 1486 ntAPPRIS P2 TSL 1 (best) BASIC19.23■□□□□ 0.67
SMIM28A0A1B0GU29 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SMIM28A0A1B0GU29 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
SMIM28A0A1B0GU29 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SMIM28A0A1B0GU29 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC19.23■□□□□ 0.67
SMIM28A0A1B0GU29 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
SMIM28A0A1B0GU29 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
SMIM28A0A1B0GU29 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SMIM28A0A1B0GU29 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SMIM28A0A1B0GU29 CTNS-203ENST00000399306 803 ntTSL 3 BASIC19.23■□□□□ 0.67
SMIM28A0A1B0GU29 RBM17P3-201ENST00000417687 1192 ntBASIC19.23■□□□□ 0.67
SMIM28A0A1B0GU29 ABCD1P5-201ENST00000445663 754 ntBASIC19.23■□□□□ 0.67
SMIM28A0A1B0GU29 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC19.23■□□□□ 0.67
SMIM28A0A1B0GU29 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC19.23■□□□□ 0.67
SMIM28A0A1B0GU29 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
SMIM28A0A1B0GU29 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SMIM28A0A1B0GU29 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
SMIM28A0A1B0GU29 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
SMIM28A0A1B0GU29 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
SMIM28A0A1B0GU29 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC19.23■□□□□ 0.67
SMIM28A0A1B0GU29 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC19.23■□□□□ 0.67
SMIM28A0A1B0GU29 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SMIM28A0A1B0GU29 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC19.23■□□□□ 0.67
SMIM28A0A1B0GU29 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC19.22■□□□□ 0.67
SMIM28A0A1B0GU29 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC19.22■□□□□ 0.67
SMIM28A0A1B0GU29 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC19.22■□□□□ 0.67
SMIM28A0A1B0GU29 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
SMIM28A0A1B0GU29 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
SMIM28A0A1B0GU29 EFTUD1P1-204ENST00000560401 1798 ntBASIC19.22■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 51.2 ms