Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
TRAIPQ9BWF2 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC19.74■□□□□ 0.75
TRAIPQ9BWF2 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC19.74■□□□□ 0.75
TRAIPQ9BWF2 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
TRAIPQ9BWF2 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC19.74■□□□□ 0.75
TRAIPQ9BWF2 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC19.74■□□□□ 0.75
TRAIPQ9BWF2 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
TRAIPQ9BWF2 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC19.74■□□□□ 0.75
TRAIPQ9BWF2 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
TRAIPQ9BWF2 CACNA1B-206ENST00000371372 9790 ntAPPRIS P4 TSL 5 BASIC19.73■□□□□ 0.75
TRAIPQ9BWF2 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
TRAIPQ9BWF2 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
TRAIPQ9BWF2 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
TRAIPQ9BWF2 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC19.73■□□□□ 0.75
TRAIPQ9BWF2 COMP-202ENST00000425807 2292 ntTSL 2 BASIC19.73■□□□□ 0.75
TRAIPQ9BWF2 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC19.73■□□□□ 0.75
TRAIPQ9BWF2 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
TRAIPQ9BWF2 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC19.73■□□□□ 0.75
TRAIPQ9BWF2 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
TRAIPQ9BWF2 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
TRAIPQ9BWF2 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
TRAIPQ9BWF2 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC19.73■□□□□ 0.75
TRAIPQ9BWF2 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC19.73■□□□□ 0.75
TRAIPQ9BWF2 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC19.73■□□□□ 0.75
TRAIPQ9BWF2 CALM3-211ENST00000598871 561 ntTSL 4 BASIC19.73■□□□□ 0.75
TRAIPQ9BWF2 AC114341.1-201ENST00000618070 349 ntBASIC19.73■□□□□ 0.75
TRAIPQ9BWF2 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC19.73■□□□□ 0.75
TRAIPQ9BWF2 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
TRAIPQ9BWF2 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC19.73■□□□□ 0.75
TRAIPQ9BWF2 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
TRAIPQ9BWF2 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC19.73■□□□□ 0.75
TRAIPQ9BWF2 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
TRAIPQ9BWF2 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC19.72■□□□□ 0.75
TRAIPQ9BWF2 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
TRAIPQ9BWF2 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
TRAIPQ9BWF2 CALB2-202ENST00000349553 1373 ntTSL 5 BASIC19.72■□□□□ 0.75
TRAIPQ9BWF2 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
TRAIPQ9BWF2 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
TRAIPQ9BWF2 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
TRAIPQ9BWF2 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
TRAIPQ9BWF2 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
TRAIPQ9BWF2 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
TRAIPQ9BWF2 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC19.72■□□□□ 0.75
TRAIPQ9BWF2 MIR5100-201ENST00000579544 119 ntBASIC19.72■□□□□ 0.75
TRAIPQ9BWF2 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
TRAIPQ9BWF2 AC005336.2-201ENST00000593183 939 ntBASIC19.72■□□□□ 0.75
TRAIPQ9BWF2 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC19.72■□□□□ 0.75
TRAIPQ9BWF2 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC19.72■□□□□ 0.75
TRAIPQ9BWF2 AL390961.4-201ENST00000623958 2535 ntBASIC19.72■□□□□ 0.75
TRAIPQ9BWF2 LINC01126-201ENST00000623515 1646 ntBASIC19.72■□□□□ 0.75
TRAIPQ9BWF2 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC19.72■□□□□ 0.75
TRAIPQ9BWF2 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
TRAIPQ9BWF2 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
TRAIPQ9BWF2 AQP8-201ENST00000219660 1359 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
TRAIPQ9BWF2 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
TRAIPQ9BWF2 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
TRAIPQ9BWF2 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
TRAIPQ9BWF2 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC19.71■□□□□ 0.75
TRAIPQ9BWF2 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
TRAIPQ9BWF2 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
TRAIPQ9BWF2 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
TRAIPQ9BWF2 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC19.71■□□□□ 0.75
TRAIPQ9BWF2 C18orf32-201ENST00000318240 1128 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
TRAIPQ9BWF2 NUS1P2-201ENST00000417358 873 ntBASIC19.71■□□□□ 0.75
TRAIPQ9BWF2 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC19.71■□□□□ 0.75
TRAIPQ9BWF2 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC19.71■□□□□ 0.75
TRAIPQ9BWF2 AL662844.1-201ENST00000546340 181 ntBASIC19.71■□□□□ 0.75
TRAIPQ9BWF2 SLC25A6P4-201ENST00000586535 553 ntBASIC19.71■□□□□ 0.75
TRAIPQ9BWF2 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC19.71■□□□□ 0.75
TRAIPQ9BWF2 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
TRAIPQ9BWF2 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
TRAIPQ9BWF2 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
TRAIPQ9BWF2 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
TRAIPQ9BWF2 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
TRAIPQ9BWF2 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
TRAIPQ9BWF2 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
TRAIPQ9BWF2 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
TRAIPQ9BWF2 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
TRAIPQ9BWF2 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
TRAIPQ9BWF2 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC19.7■□□□□ 0.74
TRAIPQ9BWF2 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
TRAIPQ9BWF2 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
TRAIPQ9BWF2 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC19.7■□□□□ 0.74
TRAIPQ9BWF2 DANCR-204ENST00000444958 709 ntTSL 3 BASIC19.7■□□□□ 0.74
TRAIPQ9BWF2 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC19.7■□□□□ 0.74
TRAIPQ9BWF2 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
TRAIPQ9BWF2 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC19.7■□□□□ 0.74
TRAIPQ9BWF2 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC19.7■□□□□ 0.74
TRAIPQ9BWF2 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
TRAIPQ9BWF2 FADS1-204ENST00000433932 1690 ntTSL 2 BASIC19.7■□□□□ 0.74
TRAIPQ9BWF2 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC19.7■□□□□ 0.74
TRAIPQ9BWF2 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC19.7■□□□□ 0.74
TRAIPQ9BWF2 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
TRAIPQ9BWF2 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC19.7■□□□□ 0.74
TRAIPQ9BWF2 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
TRAIPQ9BWF2 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
TRAIPQ9BWF2 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC19.7■□□□□ 0.74
TRAIPQ9BWF2 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC19.7■□□□□ 0.74
TRAIPQ9BWF2 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
TRAIPQ9BWF2 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC19.7■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 57.5 ms