Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 NPAP1P7-201ENST00000613027 823 ntBASIC17.89■□□□□ 0.45
VPS35Q96QK1 SP100-208ENST00000427101 1922 ntTSL 2 BASIC17.89■□□□□ 0.45
VPS35Q96QK1 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
VPS35Q96QK1 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC17.89■□□□□ 0.45
VPS35Q96QK1 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
VPS35Q96QK1 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC17.89■□□□□ 0.45
VPS35Q96QK1 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
VPS35Q96QK1 SHE-201ENST00000304760 6243 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
VPS35Q96QK1 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC17.89■□□□□ 0.45
VPS35Q96QK1 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC17.88■□□□□ 0.45
VPS35Q96QK1 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
VPS35Q96QK1 ZBTB33-201ENST00000326624 5211 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
VPS35Q96QK1 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC17.88■□□□□ 0.45
VPS35Q96QK1 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
VPS35Q96QK1 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
VPS35Q96QK1 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC17.88■□□□□ 0.45
VPS35Q96QK1 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC17.88■□□□□ 0.45
VPS35Q96QK1 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC17.88■□□□□ 0.45
VPS35Q96QK1 TYRO3-201ENST00000263798 8207 ntAPPRIS P3 TSL 1 (best) BASIC17.88■□□□□ 0.45
VPS35Q96QK1 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC17.88■□□□□ 0.45
VPS35Q96QK1 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC17.88■□□□□ 0.45
VPS35Q96QK1 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
VPS35Q96QK1 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC17.88■□□□□ 0.45
VPS35Q96QK1 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC17.88■□□□□ 0.45
VPS35Q96QK1 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC17.88■□□□□ 0.45
VPS35Q96QK1 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
VPS35Q96QK1 AL592071.1-201ENST00000611956 408 ntBASIC17.88■□□□□ 0.45
VPS35Q96QK1 IGHV3-41-201ENST00000613121 348 ntBASIC17.88■□□□□ 0.45
VPS35Q96QK1 BCL10-202ENST00000620248 774 ntTSL 5 BASIC17.88■□□□□ 0.45
VPS35Q96QK1 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC17.88■□□□□ 0.45
VPS35Q96QK1 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
VPS35Q96QK1 LTB4R2-202ENST00000528054 3092 ntBASIC17.88■□□□□ 0.45
VPS35Q96QK1 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
VPS35Q96QK1 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
VPS35Q96QK1 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC17.88■□□□□ 0.45
VPS35Q96QK1 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC17.88■□□□□ 0.45
VPS35Q96QK1 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC17.88■□□□□ 0.45
VPS35Q96QK1 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
VPS35Q96QK1 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC17.88■□□□□ 0.45
VPS35Q96QK1 NOMO2-212ENST00000622306 4252 ntAPPRIS P3 TSL 1 (best) BASIC17.88■□□□□ 0.45
VPS35Q96QK1 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
VPS35Q96QK1 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
VPS35Q96QK1 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
VPS35Q96QK1 ABALON-201ENST00000629058 1903 ntBASIC17.88■□□□□ 0.45
VPS35Q96QK1 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC17.88■□□□□ 0.45
VPS35Q96QK1 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
VPS35Q96QK1 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
VPS35Q96QK1 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC17.87■□□□□ 0.45
VPS35Q96QK1 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC17.87■□□□□ 0.45
VPS35Q96QK1 CACNA1A-214ENST00000614285 8410 ntAPPRIS ALT2 TSL 5 BASIC17.87■□□□□ 0.45
VPS35Q96QK1 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
VPS35Q96QK1 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
VPS35Q96QK1 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
VPS35Q96QK1 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
VPS35Q96QK1 PDE3B-201ENST00000282096 6076 ntAPPRIS P2 TSL 1 (best) BASIC17.87■□□□□ 0.45
VPS35Q96QK1 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC17.87■□□□□ 0.45
VPS35Q96QK1 KBTBD11-201ENST00000320248 6710 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
VPS35Q96QK1 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC17.87■□□□□ 0.45
VPS35Q96QK1 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
VPS35Q96QK1 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
VPS35Q96QK1 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
VPS35Q96QK1 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC17.87■□□□□ 0.45
VPS35Q96QK1 DRAXINP1-201ENST00000437611 948 ntBASIC17.87■□□□□ 0.45
VPS35Q96QK1 AP002383.4-201ENST00000442518 975 ntBASIC17.87■□□□□ 0.45
VPS35Q96QK1 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
VPS35Q96QK1 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC17.87■□□□□ 0.45
VPS35Q96QK1 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
VPS35Q96QK1 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
VPS35Q96QK1 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
VPS35Q96QK1 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC17.87■□□□□ 0.45
VPS35Q96QK1 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC17.87■□□□□ 0.45
VPS35Q96QK1 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC17.87■□□□□ 0.45
VPS35Q96QK1 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
VPS35Q96QK1 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC17.87■□□□□ 0.45
VPS35Q96QK1 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
VPS35Q96QK1 AC135050.7-201ENST00000624508 2218 ntBASIC17.87■□□□□ 0.45
VPS35Q96QK1 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC17.87■□□□□ 0.45
VPS35Q96QK1 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC17.87■□□□□ 0.45
VPS35Q96QK1 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
VPS35Q96QK1 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
VPS35Q96QK1 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
VPS35Q96QK1 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
VPS35Q96QK1 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
VPS35Q96QK1 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC17.86■□□□□ 0.45
VPS35Q96QK1 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
VPS35Q96QK1 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
VPS35Q96QK1 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC17.86■□□□□ 0.45
VPS35Q96QK1 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
VPS35Q96QK1 AC068472.1-201ENST00000474589 881 ntBASIC17.86■□□□□ 0.45
VPS35Q96QK1 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC17.86■□□□□ 0.45
VPS35Q96QK1 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC17.86■□□□□ 0.45
VPS35Q96QK1 AL353801.3-201ENST00000609898 542 ntBASIC17.86■□□□□ 0.45
VPS35Q96QK1 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
VPS35Q96QK1 UBR3-203ENST00000418381 7951 ntAPPRIS P1 TSL 5 BASIC17.86■□□□□ 0.45
VPS35Q96QK1 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
VPS35Q96QK1 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
VPS35Q96QK1 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC17.86■□□□□ 0.45
VPS35Q96QK1 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
VPS35Q96QK1 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
VPS35Q96QK1 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 21.7 ms