Protein–RNA interactions for Protein: Q96EP1

CHFR, E3 ubiquitin-protein ligase CHFR, humanhuman

Predictions only

Length 664 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHFRQ96EP1 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC18.29■□□□□ 0.52
CHFRQ96EP1 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
CHFRQ96EP1 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
CHFRQ96EP1 GMCL1P1-201ENST00000463439 1581 ntBASIC18.29■□□□□ 0.52
CHFRQ96EP1 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC18.29■□□□□ 0.52
CHFRQ96EP1 AC018445.3-201ENST00000624177 1945 ntBASIC18.29■□□□□ 0.52
CHFRQ96EP1 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CHFRQ96EP1 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CHFRQ96EP1 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
CHFRQ96EP1 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
CHFRQ96EP1 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
CHFRQ96EP1 ESPNP-201ENST00000270691 2015 ntBASIC18.28■□□□□ 0.52
CHFRQ96EP1 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
CHFRQ96EP1 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
CHFRQ96EP1 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CHFRQ96EP1 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC18.28■□□□□ 0.52
CHFRQ96EP1 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC18.28■□□□□ 0.52
CHFRQ96EP1 AP002414.3-201ENST00000589352 1468 ntBASIC18.28■□□□□ 0.52
CHFRQ96EP1 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC18.28■□□□□ 0.52
CHFRQ96EP1 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC18.28■□□□□ 0.52
CHFRQ96EP1 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC18.28■□□□□ 0.52
CHFRQ96EP1 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
CHFRQ96EP1 KIRREL3-AS3-201ENST00000404882 831 ntBASIC18.28■□□□□ 0.52
CHFRQ96EP1 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC18.28■□□□□ 0.52
CHFRQ96EP1 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC18.28■□□□□ 0.52
CHFRQ96EP1 AC092183.1-201ENST00000469884 875 ntBASIC18.28■□□□□ 0.52
CHFRQ96EP1 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC18.28■□□□□ 0.52
CHFRQ96EP1 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC18.28■□□□□ 0.52
CHFRQ96EP1 RNA5SP415-201ENST00000517246 115 ntBASIC18.28■□□□□ 0.52
CHFRQ96EP1 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC18.28■□□□□ 0.52
CHFRQ96EP1 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC18.28■□□□□ 0.52
CHFRQ96EP1 AL356488.2-201ENST00000602755 427 ntBASIC18.28■□□□□ 0.52
CHFRQ96EP1 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CHFRQ96EP1 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC18.28■□□□□ 0.52
CHFRQ96EP1 AC055717.3-201ENST00000622967 595 ntBASIC18.28■□□□□ 0.52
CHFRQ96EP1 AC107918.4-202ENST00000641623 219 ntBASIC18.28■□□□□ 0.52
CHFRQ96EP1 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CHFRQ96EP1 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CHFRQ96EP1 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
CHFRQ96EP1 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CHFRQ96EP1 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
CHFRQ96EP1 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CHFRQ96EP1 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
CHFRQ96EP1 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
CHFRQ96EP1 AC087289.5-201ENST00000586076 3175 ntBASIC18.28■□□□□ 0.52
CHFRQ96EP1 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
CHFRQ96EP1 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC18.27■□□□□ 0.52
CHFRQ96EP1 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
CHFRQ96EP1 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CHFRQ96EP1 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC18.27■□□□□ 0.52
CHFRQ96EP1 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
CHFRQ96EP1 AL020996.1-203ENST00000536896 2307 ntBASIC18.27■□□□□ 0.52
CHFRQ96EP1 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
CHFRQ96EP1 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC18.27■□□□□ 0.52
CHFRQ96EP1 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC18.27■□□□□ 0.52
CHFRQ96EP1 AC010460.3-201ENST00000511359 1579 ntBASIC18.27■□□□□ 0.52
CHFRQ96EP1 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CHFRQ96EP1 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC18.27■□□□□ 0.52
CHFRQ96EP1 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC18.27■□□□□ 0.52
CHFRQ96EP1 NMU-202ENST00000505262 693 ntTSL 3 BASIC18.27■□□□□ 0.52
CHFRQ96EP1 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC18.27■□□□□ 0.52
CHFRQ96EP1 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC18.27■□□□□ 0.52
CHFRQ96EP1 NUTM2B-AS1-211ENST00000601369 1233 ntTSL 2 BASIC18.27■□□□□ 0.52
CHFRQ96EP1 Z83851.2-201ENST00000609564 659 ntBASIC18.27■□□□□ 0.52
CHFRQ96EP1 AC243773.2-203ENST00000612281 640 ntTSL 3 BASIC18.27■□□□□ 0.52
CHFRQ96EP1 CCL3-204ENST00000613922 778 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CHFRQ96EP1 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
CHFRQ96EP1 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC18.27■□□□□ 0.52
CHFRQ96EP1 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC18.27■□□□□ 0.52
CHFRQ96EP1 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC18.27■□□□□ 0.52
CHFRQ96EP1 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
CHFRQ96EP1 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CHFRQ96EP1 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.52
CHFRQ96EP1 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
CHFRQ96EP1 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
CHFRQ96EP1 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
CHFRQ96EP1 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
CHFRQ96EP1 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CHFRQ96EP1 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
CHFRQ96EP1 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CHFRQ96EP1 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CHFRQ96EP1 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC18.26■□□□□ 0.51
CHFRQ96EP1 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC18.26■□□□□ 0.51
CHFRQ96EP1 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
CHFRQ96EP1 AC126763.1-201ENST00000552015 2118 ntBASIC18.26■□□□□ 0.51
CHFRQ96EP1 AC097374.2-201ENST00000618617 1306 ntBASIC18.26■□□□□ 0.51
CHFRQ96EP1 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC18.26■□□□□ 0.51
CHFRQ96EP1 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CHFRQ96EP1 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
CHFRQ96EP1 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC18.26■□□□□ 0.51
CHFRQ96EP1 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CHFRQ96EP1 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
CHFRQ96EP1 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CHFRQ96EP1 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC18.26■□□□□ 0.51
CHFRQ96EP1 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CHFRQ96EP1 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC18.26■□□□□ 0.51
CHFRQ96EP1 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CHFRQ96EP1 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
CHFRQ96EP1 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
CHFRQ96EP1 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC18.26■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 49.8 ms