Protein–RNA interactions for Protein: Q8WW32

HMGB4, High mobility group protein B4, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4Q8WW32 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC18.04■□□□□ 0.48
HMGB4Q8WW32 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
HMGB4Q8WW32 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
HMGB4Q8WW32 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
HMGB4Q8WW32 DMAP1-201ENST00000315913 1552 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
HMGB4Q8WW32 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC18.04■□□□□ 0.48
HMGB4Q8WW32 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
HMGB4Q8WW32 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
HMGB4Q8WW32 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
HMGB4Q8WW32 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC18.03■□□□□ 0.48
HMGB4Q8WW32 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC18.03■□□□□ 0.48
HMGB4Q8WW32 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
HMGB4Q8WW32 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC18.03■□□□□ 0.48
HMGB4Q8WW32 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
HMGB4Q8WW32 ENOPH1-202ENST00000505846 1689 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
HMGB4Q8WW32 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
HMGB4Q8WW32 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
HMGB4Q8WW32 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
HMGB4Q8WW32 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC18.03■□□□□ 0.48
HMGB4Q8WW32 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
HMGB4Q8WW32 MED15P5-201ENST00000423150 992 ntBASIC18.03■□□□□ 0.48
HMGB4Q8WW32 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC18.03■□□□□ 0.48
HMGB4Q8WW32 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC18.03■□□□□ 0.48
HMGB4Q8WW32 AC145285.3-201ENST00000564603 959 ntBASIC18.03■□□□□ 0.48
HMGB4Q8WW32 AC025062.2-201ENST00000605477 670 ntBASIC18.03■□□□□ 0.48
HMGB4Q8WW32 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
HMGB4Q8WW32 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
HMGB4Q8WW32 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC18.03■□□□□ 0.48
HMGB4Q8WW32 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC18.03■□□□□ 0.48
HMGB4Q8WW32 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC18.03■□□□□ 0.48
HMGB4Q8WW32 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
HMGB4Q8WW32 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
HMGB4Q8WW32 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
HMGB4Q8WW32 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC18.02■□□□□ 0.48
HMGB4Q8WW32 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
HMGB4Q8WW32 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC18.02■□□□□ 0.48
HMGB4Q8WW32 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC18.02■□□□□ 0.48
HMGB4Q8WW32 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
HMGB4Q8WW32 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
HMGB4Q8WW32 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
HMGB4Q8WW32 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC18.02■□□□□ 0.48
HMGB4Q8WW32 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.48
HMGB4Q8WW32 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC18.02■□□□□ 0.48
HMGB4Q8WW32 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
HMGB4Q8WW32 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC18.02■□□□□ 0.48
HMGB4Q8WW32 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC18.02■□□□□ 0.48
HMGB4Q8WW32 CD63-204ENST00000546939 779 ntTSL 3 BASIC18.02■□□□□ 0.48
HMGB4Q8WW32 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC18.02■□□□□ 0.48
HMGB4Q8WW32 NKAPP1-205ENST00000585790 367 ntBASIC18.02■□□□□ 0.48
HMGB4Q8WW32 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
HMGB4Q8WW32 AC140113.2-201ENST00000604370 208 ntBASIC18.02■□□□□ 0.48
HMGB4Q8WW32 AC243773.2-203ENST00000612281 640 ntTSL 3 BASIC18.02■□□□□ 0.48
HMGB4Q8WW32 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC18.02■□□□□ 0.48
HMGB4Q8WW32 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC18.02■□□□□ 0.48
HMGB4Q8WW32 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.47
HMGB4Q8WW32 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
HMGB4Q8WW32 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
HMGB4Q8WW32 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC18.02■□□□□ 0.47
HMGB4Q8WW32 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC18.02■□□□□ 0.47
HMGB4Q8WW32 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
HMGB4Q8WW32 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC18.02■□□□□ 0.47
HMGB4Q8WW32 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC18.02■□□□□ 0.47
HMGB4Q8WW32 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.47
HMGB4Q8WW32 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC18.02■□□□□ 0.47
HMGB4Q8WW32 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
HMGB4Q8WW32 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC18.01■□□□□ 0.47
HMGB4Q8WW32 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
HMGB4Q8WW32 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
HMGB4Q8WW32 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
HMGB4Q8WW32 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC18.01■□□□□ 0.47
HMGB4Q8WW32 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC18.01■□□□□ 0.47
HMGB4Q8WW32 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC18.01■□□□□ 0.47
HMGB4Q8WW32 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
HMGB4Q8WW32 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC18.01■□□□□ 0.47
HMGB4Q8WW32 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC18.01■□□□□ 0.47
HMGB4Q8WW32 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC18.01■□□□□ 0.47
HMGB4Q8WW32 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
HMGB4Q8WW32 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
HMGB4Q8WW32 SOD2-201ENST00000337404 991 ntTSL 2 BASIC18.01■□□□□ 0.47
HMGB4Q8WW32 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC18.01■□□□□ 0.47
HMGB4Q8WW32 INIP-202ENST00000374236 874 ntTSL 2 BASIC18.01■□□□□ 0.47
HMGB4Q8WW32 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
HMGB4Q8WW32 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
HMGB4Q8WW32 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC18.01■□□□□ 0.47
HMGB4Q8WW32 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC18.01■□□□□ 0.47
HMGB4Q8WW32 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
HMGB4Q8WW32 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC18.01■□□□□ 0.47
HMGB4Q8WW32 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
HMGB4Q8WW32 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC18.01■□□□□ 0.47
HMGB4Q8WW32 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC18.01■□□□□ 0.47
HMGB4Q8WW32 MTDHP4-201ENST00000600287 670 ntBASIC18.01■□□□□ 0.47
HMGB4Q8WW32 AL356488.2-201ENST00000602755 427 ntBASIC18.01■□□□□ 0.47
HMGB4Q8WW32 AC008735.5-201ENST00000623544 497 ntBASIC18.01■□□□□ 0.47
HMGB4Q8WW32 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
HMGB4Q8WW32 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC18.01■□□□□ 0.47
HMGB4Q8WW32 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
HMGB4Q8WW32 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC18.01■□□□□ 0.47
HMGB4Q8WW32 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
HMGB4Q8WW32 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
HMGB4Q8WW32 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 33.8 ms