Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC17.71■□□□□ 0.43
PKNOX1P55347 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC17.71■□□□□ 0.43
PKNOX1P55347 C2orf69P3-201ENST00000565542 1120 ntBASIC17.71■□□□□ 0.43
PKNOX1P55347 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC17.71■□□□□ 0.43
PKNOX1P55347 AP000525.1-201ENST00000608286 694 ntBASIC17.71■□□□□ 0.43
PKNOX1P55347 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC17.71■□□□□ 0.43
PKNOX1P55347 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
PKNOX1P55347 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
PKNOX1P55347 RABGAP1L-204ENST00000357444 2605 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
PKNOX1P55347 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
PKNOX1P55347 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
PKNOX1P55347 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
PKNOX1P55347 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
PKNOX1P55347 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
PKNOX1P55347 STOX1-201ENST00000298596 3377 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
PKNOX1P55347 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
PKNOX1P55347 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC17.71■□□□□ 0.42
PKNOX1P55347 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC17.71■□□□□ 0.42
PKNOX1P55347 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC17.71■□□□□ 0.42
PKNOX1P55347 AC124067.4-201ENST00000519691 2379 ntBASIC17.71■□□□□ 0.42
PKNOX1P55347 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.42
PKNOX1P55347 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC17.71■□□□□ 0.42
PKNOX1P55347 EDA-204ENST00000374553 5272 ntAPPRIS ALT1 TSL 1 (best) BASIC17.71■□□□□ 0.42
PKNOX1P55347 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
PKNOX1P55347 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC17.7■□□□□ 0.42
PKNOX1P55347 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
PKNOX1P55347 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
PKNOX1P55347 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
PKNOX1P55347 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC17.7■□□□□ 0.42
PKNOX1P55347 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
PKNOX1P55347 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
PKNOX1P55347 CACNA1A-215ENST00000635727 7536 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
PKNOX1P55347 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
PKNOX1P55347 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
PKNOX1P55347 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
PKNOX1P55347 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
PKNOX1P55347 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
PKNOX1P55347 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
PKNOX1P55347 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC17.7■□□□□ 0.42
PKNOX1P55347 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
PKNOX1P55347 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
PKNOX1P55347 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
PKNOX1P55347 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
PKNOX1P55347 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC17.7■□□□□ 0.42
PKNOX1P55347 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC17.7■□□□□ 0.42
PKNOX1P55347 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC17.7■□□□□ 0.42
PKNOX1P55347 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
PKNOX1P55347 AC010653.2-201ENST00000623505 997 ntBASIC17.7■□□□□ 0.42
PKNOX1P55347 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
PKNOX1P55347 AC099343.3-201ENST00000605834 2503 ntBASIC17.7■□□□□ 0.42
PKNOX1P55347 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
PKNOX1P55347 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
PKNOX1P55347 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
PKNOX1P55347 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC17.7■□□□□ 0.42
PKNOX1P55347 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
PKNOX1P55347 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
PKNOX1P55347 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
PKNOX1P55347 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
PKNOX1P55347 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC17.69■□□□□ 0.42
PKNOX1P55347 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
PKNOX1P55347 ORAI2-202ENST00000403646 2528 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
PKNOX1P55347 TNIP1-211ENST00000521591 2274 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
PKNOX1P55347 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
PKNOX1P55347 LINC01126-201ENST00000623515 1646 ntBASIC17.69■□□□□ 0.42
PKNOX1P55347 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
PKNOX1P55347 PHKA1-201ENST00000339490 6121 ntAPPRIS ALT1 TSL 1 (best) BASIC17.69■□□□□ 0.42
PKNOX1P55347 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC17.69■□□□□ 0.42
PKNOX1P55347 MAPKAP1-208ENST00000394063 2977 ntTSL 5 BASIC17.69■□□□□ 0.42
PKNOX1P55347 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
PKNOX1P55347 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
PKNOX1P55347 ZNF264-202ENST00000536056 2078 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
PKNOX1P55347 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC17.69■□□□□ 0.42
PKNOX1P55347 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
PKNOX1P55347 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
PKNOX1P55347 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
PKNOX1P55347 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
PKNOX1P55347 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
PKNOX1P55347 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC17.69■□□□□ 0.42
PKNOX1P55347 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
PKNOX1P55347 TSPY7P-201ENST00000431358 1114 ntBASIC17.69■□□□□ 0.42
PKNOX1P55347 GRAMD4P1-201ENST00000435181 1110 ntBASIC17.69■□□□□ 0.42
PKNOX1P55347 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
PKNOX1P55347 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
PKNOX1P55347 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC17.69■□□□□ 0.42
PKNOX1P55347 GXYLT1P6-201ENST00000456472 1187 ntBASIC17.69■□□□□ 0.42
PKNOX1P55347 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
PKNOX1P55347 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
PKNOX1P55347 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
PKNOX1P55347 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC17.69■□□□□ 0.42
PKNOX1P55347 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC17.69■□□□□ 0.42
PKNOX1P55347 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC17.69■□□□□ 0.42
PKNOX1P55347 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC17.69■□□□□ 0.42
PKNOX1P55347 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC17.69■□□□□ 0.42
PKNOX1P55347 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC17.69■□□□□ 0.42
PKNOX1P55347 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC17.69■□□□□ 0.42
PKNOX1P55347 ARHGEF28-212ENST00000513042 6273 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
PKNOX1P55347 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC17.69■□□□□ 0.42
PKNOX1P55347 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
PKNOX1P55347 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
PKNOX1P55347 TRIM9-201ENST00000298355 5284 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 39.6 ms