Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
HLA-DMBP28068 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC13.77□□□□□ -0.21
HLA-DMBP28068 PHKA1-201ENST00000339490 6121 ntAPPRIS ALT1 TSL 1 (best) BASIC13.77□□□□□ -0.21
HLA-DMBP28068 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.21
HLA-DMBP28068 KCNT1-202ENST00000371757 4717 ntAPPRIS P3 TSL 1 (best) BASIC13.77□□□□□ -0.21
HLA-DMBP28068 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
HLA-DMBP28068 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
HLA-DMBP28068 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC13.77□□□□□ -0.21
HLA-DMBP28068 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
HLA-DMBP28068 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC13.77□□□□□ -0.21
HLA-DMBP28068 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC13.77□□□□□ -0.21
HLA-DMBP28068 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC13.77□□□□□ -0.21
HLA-DMBP28068 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC13.77□□□□□ -0.21
HLA-DMBP28068 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC13.77□□□□□ -0.21
HLA-DMBP28068 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC13.77□□□□□ -0.21
HLA-DMBP28068 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC13.77□□□□□ -0.21
HLA-DMBP28068 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC13.77□□□□□ -0.21
HLA-DMBP28068 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
HLA-DMBP28068 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC13.77□□□□□ -0.21
HLA-DMBP28068 C2orf69P3-201ENST00000565542 1120 ntBASIC13.77□□□□□ -0.21
HLA-DMBP28068 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC13.77□□□□□ -0.21
HLA-DMBP28068 HOXB1-202ENST00000577092 1414 ntBASIC13.77□□□□□ -0.21
HLA-DMBP28068 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC13.77□□□□□ -0.21
HLA-DMBP28068 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC13.77□□□□□ -0.21
HLA-DMBP28068 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC13.77□□□□□ -0.21
HLA-DMBP28068 AC145285.6-201ENST00000604632 637 ntBASIC13.77□□□□□ -0.21
HLA-DMBP28068 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC13.77□□□□□ -0.21
HLA-DMBP28068 KCNK3-201ENST00000302909 6162 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
HLA-DMBP28068 ZNF354C-201ENST00000315475 5411 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
HLA-DMBP28068 MDGA1-203ENST00000434837 10736 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
HLA-DMBP28068 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC13.77□□□□□ -0.21
HLA-DMBP28068 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
HLA-DMBP28068 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
HLA-DMBP28068 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC13.76□□□□□ -0.21
HLA-DMBP28068 NME9-203ENST00000383180 2133 ntTSL 2 BASIC13.76□□□□□ -0.21
HLA-DMBP28068 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC13.76□□□□□ -0.21
HLA-DMBP28068 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC13.76□□□□□ -0.21
HLA-DMBP28068 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
HLA-DMBP28068 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
HLA-DMBP28068 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC13.76□□□□□ -0.21
HLA-DMBP28068 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
HLA-DMBP28068 ZSWIM8-223ENST00000605216 6004 ntAPPRIS P2 TSL 1 (best) BASIC13.76□□□□□ -0.21
HLA-DMBP28068 CYP2D8P-201ENST00000433633 1490 ntBASIC13.76□□□□□ -0.21
HLA-DMBP28068 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
HLA-DMBP28068 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC13.76□□□□□ -0.21
HLA-DMBP28068 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
HLA-DMBP28068 KRT18P22-201ENST00000402024 1347 ntBASIC13.76□□□□□ -0.21
HLA-DMBP28068 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC13.76□□□□□ -0.21
HLA-DMBP28068 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC13.76□□□□□ -0.21
HLA-DMBP28068 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC13.76□□□□□ -0.21
HLA-DMBP28068 INGX-201ENST00000359239 846 ntBASIC13.76□□□□□ -0.21
HLA-DMBP28068 ILF2-202ENST00000368681 726 ntTSL 2 BASIC13.76□□□□□ -0.21
HLA-DMBP28068 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC13.76□□□□□ -0.21
HLA-DMBP28068 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
HLA-DMBP28068 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
HLA-DMBP28068 SLC25A1P2-201ENST00000430693 912 ntBASIC13.76□□□□□ -0.21
HLA-DMBP28068 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC13.76□□□□□ -0.21
HLA-DMBP28068 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC13.76□□□□□ -0.21
HLA-DMBP28068 AC005363.2-201ENST00000618631 242 ntBASIC13.76□□□□□ -0.21
HLA-DMBP28068 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC13.76□□□□□ -0.21
HLA-DMBP28068 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
HLA-DMBP28068 VASH1-201ENST00000167106 5728 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
HLA-DMBP28068 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC13.76□□□□□ -0.21
HLA-DMBP28068 TRIM9-201ENST00000298355 5284 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
HLA-DMBP28068 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
HLA-DMBP28068 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC13.76□□□□□ -0.21
HLA-DMBP28068 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC13.76□□□□□ -0.21
HLA-DMBP28068 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
HLA-DMBP28068 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
HLA-DMBP28068 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC13.76□□□□□ -0.21
HLA-DMBP28068 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
HLA-DMBP28068 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC13.76□□□□□ -0.21
HLA-DMBP28068 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC13.76□□□□□ -0.21
HLA-DMBP28068 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC13.76□□□□□ -0.21
HLA-DMBP28068 AC139713.2-201ENST00000641328 2723 ntBASIC13.76□□□□□ -0.21
HLA-DMBP28068 MEGF9-201ENST00000373930 6298 ntAPPRIS P1 TSL 2 BASIC13.76□□□□□ -0.21
HLA-DMBP28068 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC13.76□□□□□ -0.21
HLA-DMBP28068 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC13.76□□□□□ -0.21
HLA-DMBP28068 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
HLA-DMBP28068 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
HLA-DMBP28068 GNA13-201ENST00000439174 4922 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
HLA-DMBP28068 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
HLA-DMBP28068 AC093010.1-201ENST00000473625 1624 ntBASIC13.75□□□□□ -0.21
HLA-DMBP28068 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC13.75□□□□□ -0.21
HLA-DMBP28068 KDM6A-213ENST00000611820 5924 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
HLA-DMBP28068 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
HLA-DMBP28068 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC13.75□□□□□ -0.21
HLA-DMBP28068 AC092338.2-201ENST00000568827 1415 ntBASIC13.75□□□□□ -0.21
HLA-DMBP28068 C6orf132-201ENST00000341865 6210 ntAPPRIS P2 TSL 5 BASIC13.75□□□□□ -0.21
HLA-DMBP28068 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
HLA-DMBP28068 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC13.75□□□□□ -0.21
HLA-DMBP28068 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
HLA-DMBP28068 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
HLA-DMBP28068 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
HLA-DMBP28068 MIR1224-201ENST00000408193 85 ntBASIC13.75□□□□□ -0.21
HLA-DMBP28068 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC13.75□□□□□ -0.21
HLA-DMBP28068 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC13.75□□□□□ -0.21
HLA-DMBP28068 TSPY17P-201ENST00000450329 467 ntBASIC13.75□□□□□ -0.21
HLA-DMBP28068 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC13.75□□□□□ -0.21
HLA-DMBP28068 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC13.75□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 74.8 ms