Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 RAB17-203ENST00000409576 466 ntTSL 3 BASIC22.68■■□□□ 1.22
NPHP1O15259 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC22.68■■□□□ 1.22
NPHP1O15259 ABCD1P5-201ENST00000445663 754 ntBASIC22.68■■□□□ 1.22
NPHP1O15259 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC22.68■■□□□ 1.22
NPHP1O15259 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC22.68■■□□□ 1.22
NPHP1O15259 AC011467.2-201ENST00000598425 242 ntBASIC22.68■■□□□ 1.22
NPHP1O15259 AL138831.2-201ENST00000606564 490 ntBASIC22.68■■□□□ 1.22
NPHP1O15259 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC22.68■■□□□ 1.22
NPHP1O15259 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC22.68■■□□□ 1.22
NPHP1O15259 AL356309.3-201ENST00000624132 1934 ntBASIC22.68■■□□□ 1.22
NPHP1O15259 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC22.68■■□□□ 1.22
NPHP1O15259 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC22.68■■□□□ 1.22
NPHP1O15259 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC22.68■■□□□ 1.22
NPHP1O15259 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
NPHP1O15259 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC22.67■■□□□ 1.22
NPHP1O15259 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC22.67■■□□□ 1.22
NPHP1O15259 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC22.67■■□□□ 1.22
NPHP1O15259 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC22.67■■□□□ 1.22
NPHP1O15259 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC22.67■■□□□ 1.22
NPHP1O15259 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC22.67■■□□□ 1.22
NPHP1O15259 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC22.67■■□□□ 1.22
NPHP1O15259 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC22.67■■□□□ 1.22
NPHP1O15259 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
NPHP1O15259 AL020996.1-203ENST00000536896 2307 ntBASIC22.67■■□□□ 1.22
NPHP1O15259 INIP-202ENST00000374236 874 ntTSL 2 BASIC22.67■■□□□ 1.22
NPHP1O15259 AC005104.2-201ENST00000427818 678 ntBASIC22.67■■□□□ 1.22
NPHP1O15259 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC22.67■■□□□ 1.22
NPHP1O15259 RBSN-204ENST00000449050 903 ntTSL 2 BASIC22.67■■□□□ 1.22
NPHP1O15259 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC22.67■■□□□ 1.22
NPHP1O15259 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC22.67■■□□□ 1.22
NPHP1O15259 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC22.67■■□□□ 1.22
NPHP1O15259 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC22.67■■□□□ 1.22
NPHP1O15259 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC22.67■■□□□ 1.22
NPHP1O15259 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC22.67■■□□□ 1.22
NPHP1O15259 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC22.67■■□□□ 1.22
NPHP1O15259 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
NPHP1O15259 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
NPHP1O15259 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
NPHP1O15259 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC22.67■■□□□ 1.22
NPHP1O15259 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
NPHP1O15259 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
NPHP1O15259 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC22.66■■□□□ 1.22
NPHP1O15259 ADM-207ENST00000530439 1839 ntTSL 2 BASIC22.66■■□□□ 1.22
NPHP1O15259 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC22.66■■□□□ 1.22
NPHP1O15259 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
NPHP1O15259 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC22.66■■□□□ 1.22
NPHP1O15259 MGLL-204ENST00000434178 4941 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
NPHP1O15259 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC22.66■■□□□ 1.22
NPHP1O15259 CHMP3-203ENST00000409225 1099 ntTSL 2 BASIC22.66■■□□□ 1.22
NPHP1O15259 PNMT-203ENST00000581428 677 ntTSL 2 BASIC22.66■■□□□ 1.22
NPHP1O15259 AL356488.2-201ENST00000602755 427 ntBASIC22.66■■□□□ 1.22
NPHP1O15259 AC140113.2-201ENST00000604370 208 ntBASIC22.66■■□□□ 1.22
NPHP1O15259 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC22.66■■□□□ 1.22
NPHP1O15259 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC22.66■■□□□ 1.22
NPHP1O15259 KLK5-201ENST00000336334 1563 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
NPHP1O15259 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC22.66■■□□□ 1.22
NPHP1O15259 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
NPHP1O15259 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
NPHP1O15259 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
NPHP1O15259 IPMK-201ENST00000373935 6133 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
NPHP1O15259 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC22.66■■□□□ 1.22
NPHP1O15259 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC22.66■■□□□ 1.22
NPHP1O15259 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
NPHP1O15259 AC125634.1-201ENST00000438758 1403 ntBASIC22.65■■□□□ 1.22
NPHP1O15259 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
NPHP1O15259 ADAM23-201ENST00000264377 6330 ntAPPRIS P2 TSL 1 (best) BASIC22.65■■□□□ 1.22
NPHP1O15259 COL4A2-201ENST00000360467 6281 ntAPPRIS P1 TSL 5 BASIC22.65■■□□□ 1.22
NPHP1O15259 AL049812.1-201ENST00000432563 2267 ntBASIC22.65■■□□□ 1.22
NPHP1O15259 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC22.65■■□□□ 1.22
NPHP1O15259 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC22.65■■□□□ 1.22
NPHP1O15259 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC22.65■■□□□ 1.22
NPHP1O15259 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
NPHP1O15259 AC098831.1-202ENST00000438821 336 ntBASIC22.65■■□□□ 1.22
NPHP1O15259 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
NPHP1O15259 AL049869.3-201ENST00000554918 558 ntTSL 3 BASIC22.65■■□□□ 1.22
NPHP1O15259 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC22.65■■□□□ 1.22
NPHP1O15259 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
NPHP1O15259 PAM16-208ENST00000573553 722 ntTSL 2 BASIC22.65■■□□□ 1.22
NPHP1O15259 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC22.65■■□□□ 1.22
NPHP1O15259 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC22.65■■□□□ 1.22
NPHP1O15259 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC22.65■■□□□ 1.22
NPHP1O15259 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC22.65■■□□□ 1.22
NPHP1O15259 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
NPHP1O15259 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
NPHP1O15259 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC22.65■■□□□ 1.22
NPHP1O15259 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC22.64■■□□□ 1.22
NPHP1O15259 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC22.64■■□□□ 1.22
NPHP1O15259 SNAI3-AS1-205ENST00000568633 2096 ntBASIC22.64■■□□□ 1.22
NPHP1O15259 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC22.64■■□□□ 1.22
NPHP1O15259 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC22.64■■□□□ 1.22
NPHP1O15259 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
NPHP1O15259 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC22.64■■□□□ 1.21
NPHP1O15259 MOSPD3-201ENST00000223054 1053 ntAPPRIS P1 TSL 2 BASIC22.64■■□□□ 1.21
NPHP1O15259 PIGU-202ENST00000374820 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC22.64■■□□□ 1.21
NPHP1O15259 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
NPHP1O15259 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC22.64■■□□□ 1.21
NPHP1O15259 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC22.64■■□□□ 1.21
NPHP1O15259 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC22.64■■□□□ 1.21
NPHP1O15259 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC22.64■■□□□ 1.21
NPHP1O15259 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC22.64■■□□□ 1.21
Retrieved 100 of 98,524 protein–RNA pairs in 42.5 ms