Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
CBX4O00257 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CBX4O00257 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CBX4O00257 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC18.42■□□□□ 0.54
CBX4O00257 POR-209ENST00000439269 1858 ntTSL 2 BASIC18.42■□□□□ 0.54
CBX4O00257 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC18.42■□□□□ 0.54
CBX4O00257 ADCY6-206ENST00000550422 5877 ntTSL 2 BASIC18.42■□□□□ 0.54
CBX4O00257 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC18.42■□□□□ 0.54
CBX4O00257 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
CBX4O00257 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC18.42■□□□□ 0.54
CBX4O00257 NDUFB9-202ENST00000517367 636 ntTSL 3 BASIC18.42■□□□□ 0.54
CBX4O00257 AP000867.3-201ENST00000524675 377 ntBASIC18.42■□□□□ 0.54
CBX4O00257 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
CBX4O00257 PRELID1P1-202ENST00000567272 903 ntBASIC18.42■□□□□ 0.54
CBX4O00257 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CBX4O00257 AC011840.4-201ENST00000578471 627 ntBASIC18.42■□□□□ 0.54
CBX4O00257 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC18.42■□□□□ 0.54
CBX4O00257 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
CBX4O00257 GNAS-AS1-203ENST00000598163 548 ntTSL 4 BASIC18.42■□□□□ 0.54
CBX4O00257 REXO1L9P-201ENST00000604264 2108 ntBASIC18.42■□□□□ 0.54
CBX4O00257 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC18.42■□□□□ 0.54
CBX4O00257 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
CBX4O00257 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC18.42■□□□□ 0.54
CBX4O00257 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CBX4O00257 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CBX4O00257 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC18.42■□□□□ 0.54
CBX4O00257 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC18.42■□□□□ 0.54
CBX4O00257 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC18.42■□□□□ 0.54
CBX4O00257 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CBX4O00257 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CBX4O00257 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CBX4O00257 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
CBX4O00257 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
CBX4O00257 PLCG1-202ENST00000373271 7395 ntAPPRIS ALT1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CBX4O00257 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CBX4O00257 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CBX4O00257 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC18.41■□□□□ 0.54
CBX4O00257 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC18.41■□□□□ 0.54
CBX4O00257 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC18.41■□□□□ 0.54
CBX4O00257 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CBX4O00257 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC18.41■□□□□ 0.54
CBX4O00257 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC18.41■□□□□ 0.54
CBX4O00257 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC18.41■□□□□ 0.54
CBX4O00257 UBR3-203ENST00000418381 7951 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
CBX4O00257 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC18.41■□□□□ 0.54
CBX4O00257 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC18.41■□□□□ 0.54
CBX4O00257 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC18.41■□□□□ 0.54
CBX4O00257 KRT18P65-201ENST00000439811 1286 ntBASIC18.41■□□□□ 0.54
CBX4O00257 ENO1-AS1-201ENST00000442636 456 ntTSL 2 BASIC18.41■□□□□ 0.54
CBX4O00257 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC18.41■□□□□ 0.54
CBX4O00257 MIR3652-201ENST00000579335 131 ntBASIC18.41■□□□□ 0.54
CBX4O00257 RN7SL510P-201ENST00000581311 263 ntBASIC18.41■□□□□ 0.54
CBX4O00257 KLK8-205ENST00000593490 267 ntTSL 3 BASIC18.41■□□□□ 0.54
CBX4O00257 KISS1R-203ENST00000606939 964 ntTSL 5 BASIC18.41■□□□□ 0.54
CBX4O00257 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC18.41■□□□□ 0.54
CBX4O00257 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CBX4O00257 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CBX4O00257 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC18.41■□□□□ 0.54
CBX4O00257 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CBX4O00257 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
CBX4O00257 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC18.41■□□□□ 0.54
CBX4O00257 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CBX4O00257 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
CBX4O00257 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CBX4O00257 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CBX4O00257 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC18.4■□□□□ 0.54
CBX4O00257 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CBX4O00257 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC18.4■□□□□ 0.54
CBX4O00257 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC18.4■□□□□ 0.54
CBX4O00257 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC18.4■□□□□ 0.54
CBX4O00257 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC18.4■□□□□ 0.54
CBX4O00257 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CBX4O00257 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC18.4■□□□□ 0.54
CBX4O00257 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC18.4■□□□□ 0.54
CBX4O00257 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC18.4■□□□□ 0.54
CBX4O00257 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC18.4■□□□□ 0.54
CBX4O00257 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CBX4O00257 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CBX4O00257 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CBX4O00257 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC18.4■□□□□ 0.54
CBX4O00257 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC18.4■□□□□ 0.54
CBX4O00257 AC068472.1-201ENST00000474589 881 ntBASIC18.4■□□□□ 0.54
CBX4O00257 SDHD-206ENST00000528182 754 ntTSL 3 BASIC18.4■□□□□ 0.54
CBX4O00257 SELENOH-204ENST00000534355 818 ntAPPRIS P2 TSL 1 (best) BASIC18.4■□□□□ 0.54
CBX4O00257 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC18.4■□□□□ 0.54
CBX4O00257 AC008567.3-202ENST00000619671 859 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
CBX4O00257 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
CBX4O00257 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
CBX4O00257 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC18.4■□□□□ 0.54
CBX4O00257 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CBX4O00257 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC18.4■□□□□ 0.54
CBX4O00257 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CBX4O00257 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
CBX4O00257 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC18.4■□□□□ 0.54
CBX4O00257 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CBX4O00257 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC18.4■□□□□ 0.54
CBX4O00257 TRPM2-202ENST00000300482 5989 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
CBX4O00257 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC18.4■□□□□ 0.54
CBX4O00257 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CBX4O00257 WWP1-202ENST00000517970 4686 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 35.7 ms