Protein–RNA interactions for Protein: Q9P232

CNTN3, Contactin-3, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CNTN3Q9P232 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
CNTN3Q9P232 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC19.39■□□□□ 0.7
CNTN3Q9P232 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
CNTN3Q9P232 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.69
CNTN3Q9P232 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
CNTN3Q9P232 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC19.39■□□□□ 0.69
CNTN3Q9P232 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
CNTN3Q9P232 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
CNTN3Q9P232 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC19.39■□□□□ 0.69
CNTN3Q9P232 DANCR-204ENST00000444958 709 ntTSL 3 BASIC19.39■□□□□ 0.69
CNTN3Q9P232 FAAHP1-202ENST00000446499 1238 ntBASIC19.39■□□□□ 0.69
CNTN3Q9P232 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC19.39■□□□□ 0.69
CNTN3Q9P232 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC19.39■□□□□ 0.69
CNTN3Q9P232 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC19.39■□□□□ 0.69
CNTN3Q9P232 FLT3LG-206ENST00000597551 951 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
CNTN3Q9P232 LINC01711-201ENST00000598340 967 ntBASIC19.39■□□□□ 0.69
CNTN3Q9P232 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
CNTN3Q9P232 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC19.39■□□□□ 0.69
CNTN3Q9P232 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
CNTN3Q9P232 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC19.39■□□□□ 0.69
CNTN3Q9P232 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
CNTN3Q9P232 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC19.39■□□□□ 0.69
CNTN3Q9P232 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC19.39■□□□□ 0.69
CNTN3Q9P232 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
CNTN3Q9P232 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
CNTN3Q9P232 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.69
CNTN3Q9P232 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
CNTN3Q9P232 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC19.39■□□□□ 0.69
CNTN3Q9P232 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
CNTN3Q9P232 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
CNTN3Q9P232 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
CNTN3Q9P232 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
CNTN3Q9P232 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
CNTN3Q9P232 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
CNTN3Q9P232 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
CNTN3Q9P232 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC19.38■□□□□ 0.69
CNTN3Q9P232 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
CNTN3Q9P232 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC19.38■□□□□ 0.69
CNTN3Q9P232 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC19.38■□□□□ 0.69
CNTN3Q9P232 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
CNTN3Q9P232 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
CNTN3Q9P232 DFFB-203ENST00000341385 572 ntTSL 5 BASIC19.38■□□□□ 0.69
CNTN3Q9P232 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
CNTN3Q9P232 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
CNTN3Q9P232 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC19.38■□□□□ 0.69
CNTN3Q9P232 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC19.38■□□□□ 0.69
CNTN3Q9P232 EMBP1-201ENST00000458200 901 ntBASIC19.38■□□□□ 0.69
CNTN3Q9P232 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
CNTN3Q9P232 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC19.38■□□□□ 0.69
CNTN3Q9P232 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC19.38■□□□□ 0.69
CNTN3Q9P232 AC009113.1-201ENST00000570267 2443 ntBASIC19.38■□□□□ 0.69
CNTN3Q9P232 AC007613.1-201ENST00000572811 2597 ntBASIC19.38■□□□□ 0.69
CNTN3Q9P232 MIR5100-201ENST00000579544 119 ntBASIC19.38■□□□□ 0.69
CNTN3Q9P232 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC19.38■□□□□ 0.69
CNTN3Q9P232 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC19.38■□□□□ 0.69
CNTN3Q9P232 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
CNTN3Q9P232 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC19.38■□□□□ 0.69
CNTN3Q9P232 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CNTN3Q9P232 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
CNTN3Q9P232 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC19.37■□□□□ 0.69
CNTN3Q9P232 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CNTN3Q9P232 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CNTN3Q9P232 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC19.37■□□□□ 0.69
CNTN3Q9P232 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CNTN3Q9P232 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CNTN3Q9P232 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC19.37■□□□□ 0.69
CNTN3Q9P232 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
CNTN3Q9P232 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC19.37■□□□□ 0.69
CNTN3Q9P232 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
CNTN3Q9P232 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
CNTN3Q9P232 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CNTN3Q9P232 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CNTN3Q9P232 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
CNTN3Q9P232 EMD-201ENST00000369835 966 ntTSL 3 BASIC19.37■□□□□ 0.69
CNTN3Q9P232 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CNTN3Q9P232 RCN1P2-201ENST00000398357 915 ntBASIC19.37■□□□□ 0.69
CNTN3Q9P232 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC19.37■□□□□ 0.69
CNTN3Q9P232 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC19.37■□□□□ 0.69
CNTN3Q9P232 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC19.37■□□□□ 0.69
CNTN3Q9P232 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC19.37■□□□□ 0.69
CNTN3Q9P232 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC19.37■□□□□ 0.69
CNTN3Q9P232 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC19.37■□□□□ 0.69
CNTN3Q9P232 AC011467.2-201ENST00000598425 242 ntBASIC19.37■□□□□ 0.69
CNTN3Q9P232 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC19.37■□□□□ 0.69
CNTN3Q9P232 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
CNTN3Q9P232 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC19.37■□□□□ 0.69
CNTN3Q9P232 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CNTN3Q9P232 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC19.37■□□□□ 0.69
CNTN3Q9P232 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC19.37■□□□□ 0.69
CNTN3Q9P232 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC19.37■□□□□ 0.69
CNTN3Q9P232 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CNTN3Q9P232 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC19.37■□□□□ 0.69
CNTN3Q9P232 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CNTN3Q9P232 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CNTN3Q9P232 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CNTN3Q9P232 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CNTN3Q9P232 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
CNTN3Q9P232 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CNTN3Q9P232 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC19.36■□□□□ 0.69
CNTN3Q9P232 KRT8P47-201ENST00000604727 1398 ntBASIC19.36■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 34.1 ms