Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
PAAF1Q9BRP4 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC19.21■□□□□ 0.67
PAAF1Q9BRP4 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC19.21■□□□□ 0.67
PAAF1Q9BRP4 AC135776.1-201ENST00000319817 2481 ntBASIC19.2■□□□□ 0.66
PAAF1Q9BRP4 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC19.2■□□□□ 0.66
PAAF1Q9BRP4 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC19.2■□□□□ 0.66
PAAF1Q9BRP4 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
PAAF1Q9BRP4 PAN3-AS1-201ENST00000563843 1351 ntBASIC19.2■□□□□ 0.66
PAAF1Q9BRP4 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
PAAF1Q9BRP4 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
PAAF1Q9BRP4 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
PAAF1Q9BRP4 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
PAAF1Q9BRP4 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC19.2■□□□□ 0.66
PAAF1Q9BRP4 AC004408.2-201ENST00000623613 2777 ntBASIC19.2■□□□□ 0.66
PAAF1Q9BRP4 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
PAAF1Q9BRP4 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC19.2■□□□□ 0.66
PAAF1Q9BRP4 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
PAAF1Q9BRP4 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC19.2■□□□□ 0.66
PAAF1Q9BRP4 AL590627.1-203ENST00000421194 1026 ntBASIC19.2■□□□□ 0.66
PAAF1Q9BRP4 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
PAAF1Q9BRP4 RNPS1P1-201ENST00000507437 918 ntBASIC19.2■□□□□ 0.66
PAAF1Q9BRP4 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
PAAF1Q9BRP4 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC19.2■□□□□ 0.66
PAAF1Q9BRP4 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC19.2■□□□□ 0.66
PAAF1Q9BRP4 CHMP4A-211ENST00000609024 735 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
PAAF1Q9BRP4 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
PAAF1Q9BRP4 METTL23-215ENST00000615984 1171 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
PAAF1Q9BRP4 NME4-212ENST00000621774 904 ntTSL 3 BASIC19.2■□□□□ 0.66
PAAF1Q9BRP4 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC19.2■□□□□ 0.66
PAAF1Q9BRP4 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
PAAF1Q9BRP4 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
PAAF1Q9BRP4 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
PAAF1Q9BRP4 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
PAAF1Q9BRP4 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
PAAF1Q9BRP4 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
PAAF1Q9BRP4 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
PAAF1Q9BRP4 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC19.2■□□□□ 0.66
PAAF1Q9BRP4 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
PAAF1Q9BRP4 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
PAAF1Q9BRP4 AC010460.3-201ENST00000511359 1579 ntBASIC19.19■□□□□ 0.66
PAAF1Q9BRP4 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
PAAF1Q9BRP4 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
PAAF1Q9BRP4 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC19.19■□□□□ 0.66
PAAF1Q9BRP4 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
PAAF1Q9BRP4 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC19.19■□□□□ 0.66
PAAF1Q9BRP4 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
PAAF1Q9BRP4 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
PAAF1Q9BRP4 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC19.19■□□□□ 0.66
PAAF1Q9BRP4 RBM17P3-201ENST00000417687 1192 ntBASIC19.19■□□□□ 0.66
PAAF1Q9BRP4 ABCD1P5-201ENST00000445663 754 ntBASIC19.19■□□□□ 0.66
PAAF1Q9BRP4 AF186996.4-201ENST00000467186 377 ntBASIC19.19■□□□□ 0.66
PAAF1Q9BRP4 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC19.19■□□□□ 0.66
PAAF1Q9BRP4 AL671883.3-201ENST00000603274 991 ntBASIC19.19■□□□□ 0.66
PAAF1Q9BRP4 BX640515.1-201ENST00000617215 977 ntBASIC19.19■□□□□ 0.66
PAAF1Q9BRP4 ABBA01031661.1-201ENST00000634362 1253 ntBASIC19.19■□□□□ 0.66
PAAF1Q9BRP4 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
PAAF1Q9BRP4 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
PAAF1Q9BRP4 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
PAAF1Q9BRP4 AC093677.2-201ENST00000600169 1863 ntBASIC19.19■□□□□ 0.66
PAAF1Q9BRP4 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
PAAF1Q9BRP4 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
PAAF1Q9BRP4 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC19.19■□□□□ 0.66
PAAF1Q9BRP4 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
PAAF1Q9BRP4 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
PAAF1Q9BRP4 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
PAAF1Q9BRP4 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
PAAF1Q9BRP4 BX323043.1-201ENST00000641006 1765 ntBASIC19.19■□□□□ 0.66
PAAF1Q9BRP4 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
PAAF1Q9BRP4 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
PAAF1Q9BRP4 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
PAAF1Q9BRP4 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC19.18■□□□□ 0.66
PAAF1Q9BRP4 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
PAAF1Q9BRP4 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC19.18■□□□□ 0.66
PAAF1Q9BRP4 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC19.18■□□□□ 0.66
PAAF1Q9BRP4 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC19.18■□□□□ 0.66
PAAF1Q9BRP4 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
PAAF1Q9BRP4 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
PAAF1Q9BRP4 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
PAAF1Q9BRP4 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC19.18■□□□□ 0.66
PAAF1Q9BRP4 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
PAAF1Q9BRP4 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC19.18■□□□□ 0.66
PAAF1Q9BRP4 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC19.18■□□□□ 0.66
PAAF1Q9BRP4 SLC25A1P1-201ENST00000528351 927 ntBASIC19.18■□□□□ 0.66
PAAF1Q9BRP4 SART3-203ENST00000546611 1184 ntBASIC19.18■□□□□ 0.66
PAAF1Q9BRP4 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
PAAF1Q9BRP4 AC064862.7-201ENST00000604520 867 ntBASIC19.18■□□□□ 0.66
PAAF1Q9BRP4 MIR7706-201ENST00000613747 67 ntBASIC19.18■□□□□ 0.66
PAAF1Q9BRP4 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
PAAF1Q9BRP4 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC19.18■□□□□ 0.66
PAAF1Q9BRP4 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
PAAF1Q9BRP4 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
PAAF1Q9BRP4 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
PAAF1Q9BRP4 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
PAAF1Q9BRP4 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC19.18■□□□□ 0.66
PAAF1Q9BRP4 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC19.18■□□□□ 0.66
PAAF1Q9BRP4 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
PAAF1Q9BRP4 IL9RP2-201ENST00000423948 1312 ntBASIC19.18■□□□□ 0.66
PAAF1Q9BRP4 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC19.18■□□□□ 0.66
PAAF1Q9BRP4 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC19.18■□□□□ 0.66
PAAF1Q9BRP4 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 50.8 ms