Protein–RNA interactions for Protein: Q96RY7

IFT140, Intraflagellar transport protein 140 homolog, humanhuman

Predictions only

Length 1,462 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
IFT140Q96RY7 DUX4L27-201ENST00000554796 1261 ntBASIC29.69■■■□□ 2.34
IFT140Q96RY7 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC29.69■■■□□ 2.34
IFT140Q96RY7 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC29.69■■■□□ 2.34
IFT140Q96RY7 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC29.69■■■□□ 2.34
IFT140Q96RY7 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC29.69■■■□□ 2.34
IFT140Q96RY7 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC29.69■■■□□ 2.34
IFT140Q96RY7 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC29.69■■■□□ 2.34
IFT140Q96RY7 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC29.69■■■□□ 2.34
IFT140Q96RY7 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC29.69■■■□□ 2.34
IFT140Q96RY7 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC29.69■■■□□ 2.34
IFT140Q96RY7 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC29.69■■■□□ 2.34
IFT140Q96RY7 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC29.68■■■□□ 2.34
IFT140Q96RY7 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC29.68■■■□□ 2.34
IFT140Q96RY7 APBB2-208ENST00000504305 1274 ntTSL 5 BASIC29.68■■■□□ 2.34
IFT140Q96RY7 NNAT-201ENST00000062104 1297 ntAPPRIS P4 TSL 1 (best) BASIC29.68■■■□□ 2.34
IFT140Q96RY7 CU104787.1-201ENST00000624155 288 ntTSL 1 (best) BASIC29.68■■■□□ 2.34
IFT140Q96RY7 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC29.68■■■□□ 2.34
IFT140Q96RY7 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC29.68■■■□□ 2.34
IFT140Q96RY7 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC29.68■■■□□ 2.34
IFT140Q96RY7 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC29.68■■■□□ 2.34
IFT140Q96RY7 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC29.68■■■□□ 2.34
IFT140Q96RY7 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC29.68■■■□□ 2.34
IFT140Q96RY7 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC29.68■■■□□ 2.34
IFT140Q96RY7 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC29.68■■■□□ 2.34
IFT140Q96RY7 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC29.68■■■□□ 2.34
IFT140Q96RY7 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC29.68■■■□□ 2.34
IFT140Q96RY7 IGHV3OR16-6-201ENST00000568775 360 ntBASIC29.68■■■□□ 2.34
IFT140Q96RY7 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC29.68■■■□□ 2.34
IFT140Q96RY7 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC29.68■■■□□ 2.34
IFT140Q96RY7 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC29.67■■■□□ 2.34
IFT140Q96RY7 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC29.67■■■□□ 2.34
IFT140Q96RY7 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC29.67■■■□□ 2.34
IFT140Q96RY7 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC29.67■■■□□ 2.34
IFT140Q96RY7 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC29.67■■■□□ 2.34
IFT140Q96RY7 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC29.67■■■□□ 2.34
IFT140Q96RY7 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC29.67■■■□□ 2.34
IFT140Q96RY7 LINC00351-201ENST00000424926 911 ntTSL 3 BASIC29.67■■■□□ 2.34
IFT140Q96RY7 DDX43P3-201ENST00000441064 443 ntBASIC29.67■■■□□ 2.34
IFT140Q96RY7 PON3-205ENST00000451904 1053 ntTSL 3 BASIC29.67■■■□□ 2.34
IFT140Q96RY7 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC29.67■■■□□ 2.34
IFT140Q96RY7 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC29.67■■■□□ 2.34
IFT140Q96RY7 CHRNA5-203ENST00000559554 1051 ntTSL 3 BASIC29.67■■■□□ 2.34
IFT140Q96RY7 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC29.67■■■□□ 2.34
IFT140Q96RY7 TVP23B-206ENST00000574226 1080 ntAPPRIS ALT1 TSL 1 (best) BASIC29.67■■■□□ 2.34
IFT140Q96RY7 RN7SL204P-201ENST00000582831 262 ntBASIC29.67■■■□□ 2.34
IFT140Q96RY7 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC29.67■■■□□ 2.34
IFT140Q96RY7 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC29.67■■■□□ 2.34
IFT140Q96RY7 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC29.67■■■□□ 2.34
IFT140Q96RY7 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC29.67■■■□□ 2.34
IFT140Q96RY7 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC29.67■■■□□ 2.34
IFT140Q96RY7 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC29.66■■■□□ 2.34
IFT140Q96RY7 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC29.66■■■□□ 2.34
IFT140Q96RY7 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC29.66■■■□□ 2.34
IFT140Q96RY7 ATP5G2-201ENST00000338662 1792 ntTSL 2 BASIC29.66■■■□□ 2.34
IFT140Q96RY7 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC29.66■■■□□ 2.34
IFT140Q96RY7 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC29.66■■■□□ 2.34
IFT140Q96RY7 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC29.66■■■□□ 2.34
IFT140Q96RY7 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC29.66■■■□□ 2.34
IFT140Q96RY7 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC29.66■■■□□ 2.34
IFT140Q96RY7 NKTR-203ENST00000442970 646 ntTSL 2 BASIC29.66■■■□□ 2.34
IFT140Q96RY7 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC29.66■■■□□ 2.34
IFT140Q96RY7 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC29.66■■■□□ 2.34
IFT140Q96RY7 AC106795.3-201ENST00000511650 547 ntTSL 4 BASIC29.66■■■□□ 2.34
IFT140Q96RY7 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC29.66■■■□□ 2.34
IFT140Q96RY7 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC29.66■■■□□ 2.34
IFT140Q96RY7 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC29.66■■■□□ 2.34
IFT140Q96RY7 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC29.65■■■□□ 2.34
IFT140Q96RY7 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC29.65■■■□□ 2.34
IFT140Q96RY7 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC29.65■■■□□ 2.34
IFT140Q96RY7 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC29.65■■■□□ 2.34
IFT140Q96RY7 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC29.65■■■□□ 2.34
IFT140Q96RY7 AC015712.4-202ENST00000558641 1007 ntTSL 4 BASIC29.65■■■□□ 2.34
IFT140Q96RY7 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC29.65■■■□□ 2.34
IFT140Q96RY7 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC29.65■■■□□ 2.34
IFT140Q96RY7 GPR42-202ENST00000597214 1182 ntAPPRIS P1 BASIC29.65■■■□□ 2.34
IFT140Q96RY7 MED16-214ENST00000617672 554 ntTSL 5 BASIC29.65■■■□□ 2.34
IFT140Q96RY7 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC29.65■■■□□ 2.34
IFT140Q96RY7 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC29.65■■■□□ 2.34
IFT140Q96RY7 HFE2-206ENST00000634927 506 ntTSL 4 BASIC29.65■■■□□ 2.34
IFT140Q96RY7 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC29.65■■■□□ 2.34
IFT140Q96RY7 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC29.65■■■□□ 2.34
IFT140Q96RY7 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC29.65■■■□□ 2.34
IFT140Q96RY7 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC29.65■■■□□ 2.34
IFT140Q96RY7 PIP4K2A-206ENST00000545335 1436 ntTSL 2 BASIC29.65■■■□□ 2.34
IFT140Q96RY7 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC29.65■■■□□ 2.34
IFT140Q96RY7 REM2-202ENST00000536884 1331 ntTSL 2 BASIC29.64■■■□□ 2.34
IFT140Q96RY7 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC29.64■■■□□ 2.34
IFT140Q96RY7 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC29.64■■■□□ 2.34
IFT140Q96RY7 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC29.64■■■□□ 2.34
IFT140Q96RY7 AC090286.1-201ENST00000354432 1489 ntTSL 1 (best) BASIC29.64■■■□□ 2.34
IFT140Q96RY7 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC29.64■■■□□ 2.34
IFT140Q96RY7 AC003669.1-201ENST00000334569 611 ntBASIC29.64■■■□□ 2.34
IFT140Q96RY7 EIF5A-201ENST00000336452 1256 ntTSL 1 (best) BASIC29.64■■■□□ 2.34
IFT140Q96RY7 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC29.64■■■□□ 2.34
IFT140Q96RY7 FAM159B-201ENST00000389074 847 ntAPPRIS P1 TSL 2 BASIC29.64■■■□□ 2.34
IFT140Q96RY7 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC29.64■■■□□ 2.34
IFT140Q96RY7 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC29.64■■■□□ 2.34
IFT140Q96RY7 GGTLC5P-201ENST00000617623 998 ntBASIC29.64■■■□□ 2.34
IFT140Q96RY7 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC29.64■■■□□ 2.34
IFT140Q96RY7 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC29.64■■■□□ 2.34
Retrieved 100 of 98,524 protein–RNA pairs in 34 ms