Protein–RNA interactions for Protein: Q496Y0

LONRF3, LON peptidase N-terminal domain and RING finger protein 3, humanhuman

Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LONRF3Q496Y0 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC20.56■□□□□ 0.88
LONRF3Q496Y0 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC20.56■□□□□ 0.88
LONRF3Q496Y0 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
LONRF3Q496Y0 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
LONRF3Q496Y0 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
LONRF3Q496Y0 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
LONRF3Q496Y0 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
LONRF3Q496Y0 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC20.55■□□□□ 0.88
LONRF3Q496Y0 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC20.55■□□□□ 0.88
LONRF3Q496Y0 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC20.55■□□□□ 0.88
LONRF3Q496Y0 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC20.55■□□□□ 0.88
LONRF3Q496Y0 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC20.55■□□□□ 0.88
LONRF3Q496Y0 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC20.55■□□□□ 0.88
LONRF3Q496Y0 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
LONRF3Q496Y0 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC20.55■□□□□ 0.88
LONRF3Q496Y0 AC112907.2-201ENST00000448639 330 ntBASIC20.55■□□□□ 0.88
LONRF3Q496Y0 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC20.55■□□□□ 0.88
LONRF3Q496Y0 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC20.55■□□□□ 0.88
LONRF3Q496Y0 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC20.55■□□□□ 0.88
LONRF3Q496Y0 AC093458.2-201ENST00000623150 629 ntBASIC20.55■□□□□ 0.88
LONRF3Q496Y0 AL024508.2-201ENST00000607749 1894 ntBASIC20.55■□□□□ 0.88
LONRF3Q496Y0 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC20.55■□□□□ 0.88
LONRF3Q496Y0 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
LONRF3Q496Y0 AC093010.1-201ENST00000473625 1624 ntBASIC20.55■□□□□ 0.88
LONRF3Q496Y0 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
LONRF3Q496Y0 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
LONRF3Q496Y0 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC20.55■□□□□ 0.88
LONRF3Q496Y0 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC20.55■□□□□ 0.88
LONRF3Q496Y0 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
LONRF3Q496Y0 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
LONRF3Q496Y0 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
LONRF3Q496Y0 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC20.55■□□□□ 0.88
LONRF3Q496Y0 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
LONRF3Q496Y0 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
LONRF3Q496Y0 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
LONRF3Q496Y0 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC20.55■□□□□ 0.88
LONRF3Q496Y0 AC012317.2-201ENST00000623305 2251 ntBASIC20.55■□□□□ 0.88
LONRF3Q496Y0 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
LONRF3Q496Y0 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
LONRF3Q496Y0 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
LONRF3Q496Y0 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
LONRF3Q496Y0 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
LONRF3Q496Y0 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC20.54■□□□□ 0.88
LONRF3Q496Y0 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
LONRF3Q496Y0 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
LONRF3Q496Y0 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC20.54■□□□□ 0.88
LONRF3Q496Y0 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC20.54■□□□□ 0.88
LONRF3Q496Y0 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
LONRF3Q496Y0 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC20.54■□□□□ 0.88
LONRF3Q496Y0 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
LONRF3Q496Y0 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC20.54■□□□□ 0.88
LONRF3Q496Y0 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
LONRF3Q496Y0 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC20.54■□□□□ 0.88
LONRF3Q496Y0 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC20.54■□□□□ 0.88
LONRF3Q496Y0 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
LONRF3Q496Y0 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC20.54■□□□□ 0.88
LONRF3Q496Y0 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC20.54■□□□□ 0.88
LONRF3Q496Y0 METTL23-204ENST00000586752 904 ntTSL 2 BASIC20.54■□□□□ 0.88
LONRF3Q496Y0 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC20.54■□□□□ 0.88
LONRF3Q496Y0 TMC5-203ENST00000396229 4917 ntAPPRIS ALT2 TSL 5 BASIC20.54■□□□□ 0.88
LONRF3Q496Y0 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
LONRF3Q496Y0 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
LONRF3Q496Y0 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC20.54■□□□□ 0.88
LONRF3Q496Y0 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
LONRF3Q496Y0 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
LONRF3Q496Y0 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
LONRF3Q496Y0 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
LONRF3Q496Y0 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
LONRF3Q496Y0 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
LONRF3Q496Y0 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
LONRF3Q496Y0 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
LONRF3Q496Y0 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
LONRF3Q496Y0 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
LONRF3Q496Y0 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC20.53■□□□□ 0.88
LONRF3Q496Y0 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC20.53■□□□□ 0.88
LONRF3Q496Y0 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
LONRF3Q496Y0 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC20.53■□□□□ 0.88
LONRF3Q496Y0 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC20.53■□□□□ 0.88
LONRF3Q496Y0 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC20.53■□□□□ 0.88
LONRF3Q496Y0 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC20.53■□□□□ 0.88
LONRF3Q496Y0 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
LONRF3Q496Y0 GPX4-201ENST00000354171 919 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
LONRF3Q496Y0 GAD2-202ENST00000376248 680 ntTSL 5 BASIC20.53■□□□□ 0.88
LONRF3Q496Y0 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
LONRF3Q496Y0 SPDYE15P-201ENST00000424157 909 ntBASIC20.53■□□□□ 0.88
LONRF3Q496Y0 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC20.53■□□□□ 0.88
LONRF3Q496Y0 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC20.53■□□□□ 0.88
LONRF3Q496Y0 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC20.53■□□□□ 0.88
LONRF3Q496Y0 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC20.53■□□□□ 0.88
LONRF3Q496Y0 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC20.53■□□□□ 0.88
LONRF3Q496Y0 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
LONRF3Q496Y0 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC20.53■□□□□ 0.88
LONRF3Q496Y0 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
LONRF3Q496Y0 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
LONRF3Q496Y0 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
LONRF3Q496Y0 EML3-212ENST00000494176 2901 ntTSL 2 BASIC20.53■□□□□ 0.88
LONRF3Q496Y0 EML3-216ENST00000529309 2909 ntTSL 2 BASIC20.53■□□□□ 0.88
LONRF3Q496Y0 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC20.53■□□□□ 0.88
LONRF3Q496Y0 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC20.53■□□□□ 0.88
LONRF3Q496Y0 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC20.53■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 45.9 ms