Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC12.96□□□□□ -0.34
PRKDCP78527 NCF1C-201ENST00000438382 1427 ntBASIC12.96□□□□□ -0.34
PRKDCP78527 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC12.96□□□□□ -0.34
PRKDCP78527 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
PRKDCP78527 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC12.95□□□□□ -0.34
PRKDCP78527 SPATA8-AS1-201ENST00000558722 465 ntTSL 3 BASIC12.95□□□□□ -0.34
PRKDCP78527 AC007216.4-201ENST00000574364 562 ntTSL 4 BASIC12.95□□□□□ -0.34
PRKDCP78527 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
PRKDCP78527 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
PRKDCP78527 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
PRKDCP78527 REM2-202ENST00000536884 1331 ntTSL 2 BASIC12.95□□□□□ -0.34
PRKDCP78527 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
PRKDCP78527 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
PRKDCP78527 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
PRKDCP78527 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
PRKDCP78527 KRTAP6-3-201ENST00000391624 636 ntAPPRIS P1 BASIC12.95□□□□□ -0.34
PRKDCP78527 PIN1P1-201ENST00000412108 996 ntBASIC12.95□□□□□ -0.34
PRKDCP78527 HRAS-205ENST00000451590 1151 ntAPPRIS P1 TSL 2 BASIC12.95□□□□□ -0.34
PRKDCP78527 KLF2P3-201ENST00000451977 1087 ntBASIC12.95□□□□□ -0.34
PRKDCP78527 AC069335.1-201ENST00000489972 472 ntBASIC12.95□□□□□ -0.34
PRKDCP78527 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
PRKDCP78527 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC12.95□□□□□ -0.34
PRKDCP78527 TMED1-207ENST00000591695 809 ntTSL 5 BASIC12.95□□□□□ -0.34
PRKDCP78527 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
PRKDCP78527 AC099778.1-201ENST00000568593 1911 ntBASIC12.95□□□□□ -0.34
PRKDCP78527 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC12.95□□□□□ -0.34
PRKDCP78527 FAM57A-202ENST00000308278 2412 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
PRKDCP78527 SLC39A4-202ENST00000301305 2174 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
PRKDCP78527 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC12.95□□□□□ -0.34
PRKDCP78527 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
PRKDCP78527 AL034550.1-201ENST00000442179 986 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
PRKDCP78527 RNF24-204ENST00000545616 1128 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
PRKDCP78527 TUBB3-203ENST00000553967 736 ntTSL 2 BASIC12.95□□□□□ -0.34
PRKDCP78527 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC12.95□□□□□ -0.34
PRKDCP78527 AC010460.3-201ENST00000511359 1579 ntBASIC12.95□□□□□ -0.34
PRKDCP78527 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC12.95□□□□□ -0.34
PRKDCP78527 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC12.95□□□□□ -0.34
PRKDCP78527 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
PRKDCP78527 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC12.95□□□□□ -0.34
PRKDCP78527 HNRNPA1P40-201ENST00000426371 1278 ntBASIC12.94□□□□□ -0.34
PRKDCP78527 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
PRKDCP78527 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
PRKDCP78527 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
PRKDCP78527 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC12.94□□□□□ -0.34
PRKDCP78527 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC12.94□□□□□ -0.34
PRKDCP78527 CU639417.3-201ENST00000624240 1404 ntBASIC12.94□□□□□ -0.34
PRKDCP78527 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC12.94□□□□□ -0.34
PRKDCP78527 AC020907.5-201ENST00000624372 1936 ntBASIC12.94□□□□□ -0.34
PRKDCP78527 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
PRKDCP78527 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC12.94□□□□□ -0.34
PRKDCP78527 C16orf92-201ENST00000300575 895 ntAPPRIS P2 TSL 1 (best) BASIC12.94□□□□□ -0.34
PRKDCP78527 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
PRKDCP78527 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
PRKDCP78527 TIMM8BP1-201ENST00000452384 211 ntBASIC12.94□□□□□ -0.34
PRKDCP78527 AC125807.1-201ENST00000483097 614 ntBASIC12.94□□□□□ -0.34
PRKDCP78527 CHMP4A-204ENST00000530996 967 ntTSL 3 BASIC12.94□□□□□ -0.34
PRKDCP78527 INO80E-210ENST00000567705 880 ntTSL 3 BASIC12.94□□□□□ -0.34
PRKDCP78527 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC12.94□□□□□ -0.34
PRKDCP78527 AC008667.4-201ENST00000607370 168 ntBASIC12.94□□□□□ -0.34
PRKDCP78527 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
PRKDCP78527 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC12.94□□□□□ -0.34
PRKDCP78527 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
PRKDCP78527 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC12.94□□□□□ -0.34
PRKDCP78527 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC12.94□□□□□ -0.34
PRKDCP78527 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
PRKDCP78527 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC12.94□□□□□ -0.34
PRKDCP78527 CEP19-201ENST00000399942 1172 ntAPPRIS ALT2 TSL 5 BASIC12.94□□□□□ -0.34
PRKDCP78527 AC080129.2-201ENST00000418353 430 ntTSL 3 BASIC12.94□□□□□ -0.34
PRKDCP78527 TMPRSS11CP-201ENST00000453277 683 ntBASIC12.94□□□□□ -0.34
PRKDCP78527 LINC01220-201ENST00000558575 715 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
PRKDCP78527 AC027575.2-201ENST00000585258 1295 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
PRKDCP78527 MIR6805-201ENST00000615055 62 ntBASIC12.94□□□□□ -0.34
PRKDCP78527 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC12.94□□□□□ -0.34
PRKDCP78527 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC12.94□□□□□ -0.34
PRKDCP78527 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
PRKDCP78527 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
PRKDCP78527 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
PRKDCP78527 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC12.94□□□□□ -0.34
PRKDCP78527 HCG4-201ENST00000418983 998 ntBASIC12.94□□□□□ -0.34
PRKDCP78527 PPP6R2P1-201ENST00000450880 1275 ntBASIC12.94□□□□□ -0.34
PRKDCP78527 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
PRKDCP78527 HHEX-203ENST00000492654 808 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
PRKDCP78527 AL157392.3-207ENST00000601758 744 ntTSL 5 BASIC12.94□□□□□ -0.34
PRKDCP78527 PRF1-203ENST00000638674 1080 ntTSL 5 BASIC12.94□□□□□ -0.34
PRKDCP78527 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
PRKDCP78527 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC12.93□□□□□ -0.34
PRKDCP78527 KRT8P47-201ENST00000604727 1398 ntBASIC12.93□□□□□ -0.34
PRKDCP78527 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
PRKDCP78527 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC12.93□□□□□ -0.34
PRKDCP78527 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC12.93□□□□□ -0.34
PRKDCP78527 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
PRKDCP78527 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC12.93□□□□□ -0.34
PRKDCP78527 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC12.93□□□□□ -0.34
PRKDCP78527 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
PRKDCP78527 NAA10-201ENST00000370009 837 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
PRKDCP78527 NAA10-203ENST00000370015 1002 ntTSL 5 BASIC12.93□□□□□ -0.34
PRKDCP78527 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC12.93□□□□□ -0.34
PRKDCP78527 ERGIC1-212ENST00000523291 586 ntTSL 2 BASIC12.93□□□□□ -0.34
PRKDCP78527 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC12.93□□□□□ -0.34
PRKDCP78527 Z84492.1-201ENST00000606589 408 ntAPPRIS P1 TSL 3 BASIC12.93□□□□□ -0.34
Retrieved 100 of 98,524 protein–RNA pairs in 45.1 ms