Protein–RNA interactions for Protein: P53667

LIMK1, LIM domain kinase 1, humanhuman

Predictions only

Length 647 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1P53667 RNASEH1-AS1-202ENST00000438436 1218 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
LIMK1P53667 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
LIMK1P53667 RBSN-204ENST00000449050 903 ntTSL 2 BASIC17.82■□□□□ 0.44
LIMK1P53667 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC17.82■□□□□ 0.44
LIMK1P53667 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
LIMK1P53667 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC17.82■□□□□ 0.44
LIMK1P53667 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC17.82■□□□□ 0.44
LIMK1P53667 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
LIMK1P53667 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC17.82■□□□□ 0.44
LIMK1P53667 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC17.82■□□□□ 0.44
LIMK1P53667 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC17.82■□□□□ 0.44
LIMK1P53667 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
LIMK1P53667 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
LIMK1P53667 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC17.82■□□□□ 0.44
LIMK1P53667 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
LIMK1P53667 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
LIMK1P53667 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
LIMK1P53667 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC17.82■□□□□ 0.44
LIMK1P53667 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
LIMK1P53667 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
LIMK1P53667 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC17.81■□□□□ 0.44
LIMK1P53667 TP73-202ENST00000354437 2140 ntTSL 5 BASIC17.81■□□□□ 0.44
LIMK1P53667 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC17.81■□□□□ 0.44
LIMK1P53667 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC17.81■□□□□ 0.44
LIMK1P53667 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC17.81■□□□□ 0.44
LIMK1P53667 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
LIMK1P53667 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC17.81■□□□□ 0.44
LIMK1P53667 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC17.81■□□□□ 0.44
LIMK1P53667 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
LIMK1P53667 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
LIMK1P53667 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
LIMK1P53667 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
LIMK1P53667 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC17.81■□□□□ 0.44
LIMK1P53667 PHF19-201ENST00000312189 836 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
LIMK1P53667 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
LIMK1P53667 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC17.81■□□□□ 0.44
LIMK1P53667 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
LIMK1P53667 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
LIMK1P53667 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC17.81■□□□□ 0.44
LIMK1P53667 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC17.81■□□□□ 0.44
LIMK1P53667 UNC93B6-202ENST00000528242 690 ntBASIC17.81■□□□□ 0.44
LIMK1P53667 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC17.81■□□□□ 0.44
LIMK1P53667 AC105339.3-201ENST00000560043 636 ntBASIC17.81■□□□□ 0.44
LIMK1P53667 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC17.81■□□□□ 0.44
LIMK1P53667 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC17.81■□□□□ 0.44
LIMK1P53667 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC17.81■□□□□ 0.44
LIMK1P53667 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC17.81■□□□□ 0.44
LIMK1P53667 AL032819.2-201ENST00000624543 2162 ntBASIC17.81■□□□□ 0.44
LIMK1P53667 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC17.81■□□□□ 0.44
LIMK1P53667 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC17.81■□□□□ 0.44
LIMK1P53667 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
LIMK1P53667 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
LIMK1P53667 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC17.81■□□□□ 0.44
LIMK1P53667 KRT8P32-201ENST00000512863 1461 ntBASIC17.81■□□□□ 0.44
LIMK1P53667 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
LIMK1P53667 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC17.81■□□□□ 0.44
LIMK1P53667 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
LIMK1P53667 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC17.8■□□□□ 0.44
LIMK1P53667 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
LIMK1P53667 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
LIMK1P53667 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC17.8■□□□□ 0.44
LIMK1P53667 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
LIMK1P53667 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
LIMK1P53667 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
LIMK1P53667 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
LIMK1P53667 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
LIMK1P53667 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC17.8■□□□□ 0.44
LIMK1P53667 CSNK2B-203ENST00000375882 948 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
LIMK1P53667 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC17.8■□□□□ 0.44
LIMK1P53667 JMJD7-203ENST00000408047 1192 ntTSL 5 BASIC17.8■□□□□ 0.44
LIMK1P53667 ABCD1P5-201ENST00000445663 754 ntBASIC17.8■□□□□ 0.44
LIMK1P53667 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC17.8■□□□□ 0.44
LIMK1P53667 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC17.8■□□□□ 0.44
LIMK1P53667 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC17.8■□□□□ 0.44
LIMK1P53667 AC239800.4-201ENST00000603712 296 ntBASIC17.8■□□□□ 0.44
LIMK1P53667 AL139288.1-201ENST00000623748 933 ntBASIC17.8■□□□□ 0.44
LIMK1P53667 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
LIMK1P53667 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
LIMK1P53667 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
LIMK1P53667 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC17.8■□□□□ 0.44
LIMK1P53667 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
LIMK1P53667 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
LIMK1P53667 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
LIMK1P53667 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
LIMK1P53667 AL356309.3-201ENST00000624132 1934 ntBASIC17.8■□□□□ 0.44
LIMK1P53667 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
LIMK1P53667 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
LIMK1P53667 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
LIMK1P53667 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
LIMK1P53667 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
LIMK1P53667 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC17.79■□□□□ 0.44
LIMK1P53667 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
LIMK1P53667 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
LIMK1P53667 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
LIMK1P53667 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
LIMK1P53667 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
LIMK1P53667 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC17.79■□□□□ 0.44
LIMK1P53667 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
LIMK1P53667 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC17.79■□□□□ 0.44
LIMK1P53667 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 50.9 ms