Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
PTPN9P43378 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC18.77■□□□□ 0.6
PTPN9P43378 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC18.77■□□□□ 0.6
PTPN9P43378 FAM86EP-206ENST00000510506 987 ntBASIC18.77■□□□□ 0.6
PTPN9P43378 AC009084.1-201ENST00000566869 317 ntTSL 5 BASIC18.77■□□□□ 0.6
PTPN9P43378 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC18.77■□□□□ 0.6
PTPN9P43378 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC18.77■□□□□ 0.6
PTPN9P43378 C10orf142-202ENST00000623589 1010 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.6
PTPN9P43378 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
PTPN9P43378 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.6
PTPN9P43378 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC18.77■□□□□ 0.6
PTPN9P43378 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
PTPN9P43378 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
PTPN9P43378 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
PTPN9P43378 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
PTPN9P43378 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
PTPN9P43378 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC18.77■□□□□ 0.59
PTPN9P43378 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
PTPN9P43378 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC18.77■□□□□ 0.59
PTPN9P43378 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.59
PTPN9P43378 CD276-203ENST00000537340 2439 ntTSL 2 BASIC18.76■□□□□ 0.59
PTPN9P43378 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
PTPN9P43378 UBC-206ENST00000538617 1303 ntTSL 5 BASIC18.76■□□□□ 0.59
PTPN9P43378 AC018470.1-201ENST00000624790 3129 ntBASIC18.76■□□□□ 0.59
PTPN9P43378 ADCY5-202ENST00000462833 7311 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
PTPN9P43378 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC18.76■□□□□ 0.59
PTPN9P43378 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC18.76■□□□□ 0.59
PTPN9P43378 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
PTPN9P43378 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
PTPN9P43378 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
PTPN9P43378 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
PTPN9P43378 AC100803.2-201ENST00000562459 1963 ntBASIC18.76■□□□□ 0.59
PTPN9P43378 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
PTPN9P43378 HAAO-201ENST00000294973 1265 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
PTPN9P43378 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC18.76■□□□□ 0.59
PTPN9P43378 CNP-204ENST00000472031 1019 ntTSL 2 BASIC18.76■□□□□ 0.59
PTPN9P43378 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
PTPN9P43378 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC18.76■□□□□ 0.59
PTPN9P43378 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC18.76■□□□□ 0.59
PTPN9P43378 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
PTPN9P43378 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC18.76■□□□□ 0.59
PTPN9P43378 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC18.76■□□□□ 0.59
PTPN9P43378 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC18.76■□□□□ 0.59
PTPN9P43378 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
PTPN9P43378 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
PTPN9P43378 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC18.76■□□□□ 0.59
PTPN9P43378 LETM1P2-201ENST00000597330 2178 ntBASIC18.76■□□□□ 0.59
PTPN9P43378 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
PTPN9P43378 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
PTPN9P43378 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC18.76■□□□□ 0.59
PTPN9P43378 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC18.75■□□□□ 0.59
PTPN9P43378 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
PTPN9P43378 AC005332.1-201ENST00000577698 1310 ntBASIC18.75■□□□□ 0.59
PTPN9P43378 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC18.75■□□□□ 0.59
PTPN9P43378 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC18.75■□□□□ 0.59
PTPN9P43378 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
PTPN9P43378 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC18.75■□□□□ 0.59
PTPN9P43378 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
PTPN9P43378 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
PTPN9P43378 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
PTPN9P43378 ISCU-203ENST00000431221 799 ntTSL 2 BASIC18.75■□□□□ 0.59
PTPN9P43378 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC18.75■□□□□ 0.59
PTPN9P43378 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
PTPN9P43378 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC18.75■□□□□ 0.59
PTPN9P43378 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC18.75■□□□□ 0.59
PTPN9P43378 AC011498.5-201ENST00000592027 486 ntBASIC18.75■□□□□ 0.59
PTPN9P43378 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
PTPN9P43378 NDUFV2-AS1-203ENST00000608008 779 ntBASIC18.75■□□□□ 0.59
PTPN9P43378 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
PTPN9P43378 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
PTPN9P43378 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
PTPN9P43378 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC18.75■□□□□ 0.59
PTPN9P43378 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC18.75■□□□□ 0.59
PTPN9P43378 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
PTPN9P43378 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC18.75■□□□□ 0.59
PTPN9P43378 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
PTPN9P43378 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC18.75■□□□□ 0.59
PTPN9P43378 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
PTPN9P43378 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC18.75■□□□□ 0.59
PTPN9P43378 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
PTPN9P43378 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC18.74■□□□□ 0.59
PTPN9P43378 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
PTPN9P43378 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC18.74■□□□□ 0.59
PTPN9P43378 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC18.74■□□□□ 0.59
PTPN9P43378 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
PTPN9P43378 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
PTPN9P43378 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC18.74■□□□□ 0.59
PTPN9P43378 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC18.74■□□□□ 0.59
PTPN9P43378 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC18.74■□□□□ 0.59
PTPN9P43378 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
PTPN9P43378 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
PTPN9P43378 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC18.74■□□□□ 0.59
PTPN9P43378 AC006116.8-202ENST00000587620 1550 ntBASIC18.74■□□□□ 0.59
PTPN9P43378 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
PTPN9P43378 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
PTPN9P43378 BET1L-202ENST00000332865 533 ntTSL 5 BASIC18.74■□□□□ 0.59
PTPN9P43378 GPX4-201ENST00000354171 919 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
PTPN9P43378 UFSP1-201ENST00000388761 996 ntAPPRIS P1 BASIC18.74■□□□□ 0.59
PTPN9P43378 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
PTPN9P43378 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 20.7 ms