Protein–RNA interactions for Protein: P41002

CCNF, Cyclin-F, humanhuman

Predictions only

Length 786 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCNFP41002 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
CCNFP41002 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
CCNFP41002 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC18.18■□□□□ 0.5
CCNFP41002 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
CCNFP41002 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
CCNFP41002 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
CCNFP41002 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CCNFP41002 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
CCNFP41002 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CCNFP41002 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC18.18■□□□□ 0.5
CCNFP41002 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
CCNFP41002 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CCNFP41002 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
CCNFP41002 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC18.17■□□□□ 0.5
CCNFP41002 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
CCNFP41002 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
CCNFP41002 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
CCNFP41002 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
CCNFP41002 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
CCNFP41002 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC18.17■□□□□ 0.5
CCNFP41002 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
CCNFP41002 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CCNFP41002 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CCNFP41002 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC18.17■□□□□ 0.5
CCNFP41002 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
CCNFP41002 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CCNFP41002 ILF2-202ENST00000368681 726 ntTSL 2 BASIC18.17■□□□□ 0.5
CCNFP41002 TSPY8-202ENST00000383000 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
CCNFP41002 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
CCNFP41002 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
CCNFP41002 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
CCNFP41002 AC005363.2-201ENST00000618631 242 ntBASIC18.17■□□□□ 0.5
CCNFP41002 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
CCNFP41002 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
CCNFP41002 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
CCNFP41002 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CCNFP41002 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CCNFP41002 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC18.17■□□□□ 0.5
CCNFP41002 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CCNFP41002 CYP51A1P1-201ENST00000492267 1507 ntBASIC18.17■□□□□ 0.5
CCNFP41002 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
CCNFP41002 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC18.17■□□□□ 0.5
CCNFP41002 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
CCNFP41002 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
CCNFP41002 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
CCNFP41002 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC18.16■□□□□ 0.5
CCNFP41002 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC18.16■□□□□ 0.5
CCNFP41002 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC18.16■□□□□ 0.5
CCNFP41002 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC18.16■□□□□ 0.5
CCNFP41002 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
CCNFP41002 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
CCNFP41002 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
CCNFP41002 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
CCNFP41002 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CCNFP41002 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CCNFP41002 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CCNFP41002 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CCNFP41002 AP000523.1-201ENST00000398242 1049 ntBASIC18.16■□□□□ 0.5
CCNFP41002 LIN28AP1-201ENST00000429574 405 ntBASIC18.16■□□□□ 0.5
CCNFP41002 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC18.16■□□□□ 0.5
CCNFP41002 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC18.16■□□□□ 0.5
CCNFP41002 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC18.16■□□□□ 0.5
CCNFP41002 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC18.16■□□□□ 0.5
CCNFP41002 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC18.16■□□□□ 0.5
CCNFP41002 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC18.16■□□□□ 0.5
CCNFP41002 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CCNFP41002 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
CCNFP41002 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC18.16■□□□□ 0.5
CCNFP41002 AC141586.5-201ENST00000624546 2050 ntBASIC18.16■□□□□ 0.5
CCNFP41002 RABGAP1L-204ENST00000357444 2605 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
CCNFP41002 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC18.16■□□□□ 0.5
CCNFP41002 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CCNFP41002 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC18.16■□□□□ 0.5
CCNFP41002 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
CCNFP41002 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
CCNFP41002 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
CCNFP41002 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC18.15■□□□□ 0.5
CCNFP41002 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC18.15■□□□□ 0.5
CCNFP41002 AC099343.3-201ENST00000605834 2503 ntBASIC18.15■□□□□ 0.5
CCNFP41002 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CCNFP41002 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
CCNFP41002 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC18.15■□□□□ 0.5
CCNFP41002 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
CCNFP41002 AC021087.1-201ENST00000512642 522 ntTSL 2 BASIC18.15■□□□□ 0.5
CCNFP41002 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
CCNFP41002 NEK4P2-201ENST00000580004 1012 ntBASIC18.15■□□□□ 0.5
CCNFP41002 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC18.15■□□□□ 0.5
CCNFP41002 NAT14-202ENST00000587400 416 ntTSL 5 BASIC18.15■□□□□ 0.5
CCNFP41002 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CCNFP41002 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC18.15■□□□□ 0.5
CCNFP41002 AC080080.1-201ENST00000625121 2420 ntBASIC18.15■□□□□ 0.5
CCNFP41002 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CCNFP41002 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC18.15■□□□□ 0.5
CCNFP41002 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CCNFP41002 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
CCNFP41002 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CCNFP41002 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
CCNFP41002 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
CCNFP41002 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
CCNFP41002 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 23.3 ms