Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
USF1P22415 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
USF1P22415 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
USF1P22415 TRIM9-201ENST00000298355 5284 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
USF1P22415 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC15.32■□□□□ 0.04
USF1P22415 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
USF1P22415 UCHL5-206ENST00000367455 5327 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
USF1P22415 AL353692.3-201ENST00000407031 1396 ntBASIC15.32■□□□□ 0.04
USF1P22415 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
USF1P22415 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
USF1P22415 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC15.32■□□□□ 0.04
USF1P22415 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
USF1P22415 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC15.32■□□□□ 0.04
USF1P22415 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
USF1P22415 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC15.32■□□□□ 0.04
USF1P22415 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
USF1P22415 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
USF1P22415 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
USF1P22415 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
USF1P22415 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
USF1P22415 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
USF1P22415 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC15.31■□□□□ 0.04
USF1P22415 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
USF1P22415 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
USF1P22415 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
USF1P22415 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC15.31■□□□□ 0.04
USF1P22415 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
USF1P22415 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC15.31■□□□□ 0.04
USF1P22415 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
USF1P22415 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
USF1P22415 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
USF1P22415 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC15.31■□□□□ 0.04
USF1P22415 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
USF1P22415 LARP4B-211ENST00000612396 8546 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
USF1P22415 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
USF1P22415 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC15.31■□□□□ 0.04
USF1P22415 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
USF1P22415 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC15.31■□□□□ 0.04
USF1P22415 UNC13A-205ENST00000551649 6052 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
USF1P22415 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
USF1P22415 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
USF1P22415 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
USF1P22415 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC15.31■□□□□ 0.04
USF1P22415 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
USF1P22415 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
USF1P22415 AL022342.1-201ENST00000400363 863 ntBASIC15.31■□□□□ 0.04
USF1P22415 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
USF1P22415 IGHV3-47-201ENST00000425060 335 ntBASIC15.31■□□□□ 0.04
USF1P22415 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
USF1P22415 KRT16P4-201ENST00000453883 522 ntBASIC15.31■□□□□ 0.04
USF1P22415 MINOS1P3-201ENST00000457048 203 ntBASIC15.31■□□□□ 0.04
USF1P22415 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC15.31■□□□□ 0.04
USF1P22415 RN7SL606P-201ENST00000472779 293 ntBASIC15.31■□□□□ 0.04
USF1P22415 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC15.31■□□□□ 0.04
USF1P22415 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC15.31■□□□□ 0.04
USF1P22415 AC079776.4-201ENST00000511039 504 ntBASIC15.31■□□□□ 0.04
USF1P22415 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC15.31■□□□□ 0.04
USF1P22415 ABR-204ENST00000543210 1049 ntTSL 2 BASIC15.31■□□□□ 0.04
USF1P22415 ABR-217ENST00000572441 563 ntTSL 4 BASIC15.31■□□□□ 0.04
USF1P22415 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC15.31■□□□□ 0.04
USF1P22415 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC15.31■□□□□ 0.04
USF1P22415 FRMD4A-203ENST00000357447 6821 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
USF1P22415 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
USF1P22415 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
USF1P22415 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC15.31■□□□□ 0.04
USF1P22415 NOMO2-212ENST00000622306 4252 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
USF1P22415 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
USF1P22415 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
USF1P22415 ITGA9-201ENST00000264741 7889 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
USF1P22415 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
USF1P22415 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
USF1P22415 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC15.31■□□□□ 0.04
USF1P22415 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC15.31■□□□□ 0.04
USF1P22415 Z98044.1-201ENST00000632503 1764 ntBASIC15.31■□□□□ 0.04
USF1P22415 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
USF1P22415 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
USF1P22415 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
USF1P22415 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
USF1P22415 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC15.31■□□□□ 0.04
USF1P22415 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
USF1P22415 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
USF1P22415 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC15.31■□□□□ 0.04
USF1P22415 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
USF1P22415 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC15.31■□□□□ 0.04
USF1P22415 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC15.3■□□□□ 0.04
USF1P22415 MPV17L-201ENST00000287594 5820 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
USF1P22415 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
USF1P22415 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
USF1P22415 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
USF1P22415 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC15.3■□□□□ 0.04
USF1P22415 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
USF1P22415 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
USF1P22415 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
USF1P22415 AC005082.1-201ENST00000413042 2259 ntBASIC15.3■□□□□ 0.04
USF1P22415 NSUN5P1-202ENST00000421140 1535 ntBASIC15.3■□□□□ 0.04
USF1P22415 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC15.3■□□□□ 0.04
USF1P22415 NSUN5P2-203ENST00000457352 1529 ntBASIC15.3■□□□□ 0.04
USF1P22415 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC15.3■□□□□ 0.04
USF1P22415 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
USF1P22415 AC106795.1-205ENST00000512851 1056 ntBASIC15.3■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 27.5 ms