Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC17.63■□□□□ 0.41
SDC3O75056 AC139887.3-201ENST00000568585 713 ntBASIC17.63■□□□□ 0.41
SDC3O75056 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
SDC3O75056 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC17.63■□□□□ 0.41
SDC3O75056 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
SDC3O75056 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC17.63■□□□□ 0.41
SDC3O75056 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC17.63■□□□□ 0.41
SDC3O75056 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
SDC3O75056 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC17.63■□□□□ 0.41
SDC3O75056 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
SDC3O75056 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
SDC3O75056 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
SDC3O75056 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
SDC3O75056 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
SDC3O75056 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
SDC3O75056 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC17.63■□□□□ 0.41
SDC3O75056 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC17.63■□□□□ 0.41
SDC3O75056 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
SDC3O75056 EVPL-202ENST00000586740 6223 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
SDC3O75056 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC17.62■□□□□ 0.41
SDC3O75056 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC17.62■□□□□ 0.41
SDC3O75056 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC17.62■□□□□ 0.41
SDC3O75056 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
SDC3O75056 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
SDC3O75056 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC17.62■□□□□ 0.41
SDC3O75056 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
SDC3O75056 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC17.62■□□□□ 0.41
SDC3O75056 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
SDC3O75056 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC17.62■□□□□ 0.41
SDC3O75056 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC17.62■□□□□ 0.41
SDC3O75056 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC17.62■□□□□ 0.41
SDC3O75056 LAMTOR5-201ENST00000256644 868 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
SDC3O75056 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC17.62■□□□□ 0.41
SDC3O75056 KRT18P13-201ENST00000400056 1290 ntBASIC17.62■□□□□ 0.41
SDC3O75056 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
SDC3O75056 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
SDC3O75056 LAMTOR5-204ENST00000483260 694 ntTSL 2 BASIC17.62■□□□□ 0.41
SDC3O75056 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC17.62■□□□□ 0.41
SDC3O75056 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC17.62■□□□□ 0.41
SDC3O75056 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC17.62■□□□□ 0.41
SDC3O75056 PAM16-208ENST00000573553 722 ntTSL 2 BASIC17.62■□□□□ 0.41
SDC3O75056 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC17.62■□□□□ 0.41
SDC3O75056 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC17.62■□□□□ 0.41
SDC3O75056 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC17.62■□□□□ 0.41
SDC3O75056 LAMTOR5-206ENST00000602318 634 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
SDC3O75056 PRKN-208ENST00000610470 531 ntTSL 2 BASIC17.62■□□□□ 0.41
SDC3O75056 PRKN-209ENST00000612485 225 ntTSL 5 BASIC17.62■□□□□ 0.41
SDC3O75056 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
SDC3O75056 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC17.62■□□□□ 0.41
SDC3O75056 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC17.62■□□□□ 0.41
SDC3O75056 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
SDC3O75056 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC17.62■□□□□ 0.41
SDC3O75056 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC17.62■□□□□ 0.41
SDC3O75056 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
SDC3O75056 QSOX2-201ENST00000358701 4530 ntAPPRIS P1 TSL 2 BASIC17.62■□□□□ 0.41
SDC3O75056 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
SDC3O75056 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
SDC3O75056 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
SDC3O75056 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
SDC3O75056 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
SDC3O75056 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
SDC3O75056 ANO7L1-203ENST00000602586 1720 ntBASIC17.61■□□□□ 0.41
SDC3O75056 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC17.61■□□□□ 0.41
SDC3O75056 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
SDC3O75056 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC17.61■□□□□ 0.41
SDC3O75056 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC17.61■□□□□ 0.41
SDC3O75056 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
SDC3O75056 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
SDC3O75056 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC17.61■□□□□ 0.41
SDC3O75056 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
SDC3O75056 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC17.61■□□□□ 0.41
SDC3O75056 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC17.61■□□□□ 0.41
SDC3O75056 RPL13AP23-201ENST00000480739 586 ntBASIC17.61■□□□□ 0.41
SDC3O75056 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC17.61■□□□□ 0.41
SDC3O75056 KRT18P58-201ENST00000527480 1120 ntBASIC17.61■□□□□ 0.41
SDC3O75056 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC17.61■□□□□ 0.41
SDC3O75056 AC106730.1-201ENST00000566722 1090 ntBASIC17.61■□□□□ 0.41
SDC3O75056 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
SDC3O75056 AC011467.2-201ENST00000598425 242 ntBASIC17.61■□□□□ 0.41
SDC3O75056 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
SDC3O75056 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
SDC3O75056 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
SDC3O75056 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC17.61■□□□□ 0.41
SDC3O75056 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
SDC3O75056 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
SDC3O75056 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
SDC3O75056 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
SDC3O75056 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
SDC3O75056 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
SDC3O75056 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC17.61■□□□□ 0.41
SDC3O75056 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC17.61■□□□□ 0.41
SDC3O75056 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC17.61■□□□□ 0.41
SDC3O75056 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
SDC3O75056 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
SDC3O75056 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC17.6■□□□□ 0.41
SDC3O75056 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC17.6■□□□□ 0.41
SDC3O75056 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
SDC3O75056 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
SDC3O75056 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC17.6■□□□□ 0.41
SDC3O75056 KRT18P65-201ENST00000439811 1286 ntBASIC17.6■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 23.2 ms