Protein–RNA interactions for Protein: O60609

GFRA3, GDNF family receptor alpha-3, humanhuman

Predictions only

Length 400 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
GFRA3O60609 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
GFRA3O60609 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
GFRA3O60609 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
GFRA3O60609 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC17.44■□□□□ 0.38
GFRA3O60609 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC17.44■□□□□ 0.38
GFRA3O60609 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
GFRA3O60609 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC17.44■□□□□ 0.38
GFRA3O60609 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC17.44■□□□□ 0.38
GFRA3O60609 PKD1P6-201ENST00000343738 4769 ntBASIC17.44■□□□□ 0.38
GFRA3O60609 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC17.43■□□□□ 0.38
GFRA3O60609 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC17.43■□□□□ 0.38
GFRA3O60609 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC17.43■□□□□ 0.38
GFRA3O60609 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC17.43■□□□□ 0.38
GFRA3O60609 C12orf10-201ENST00000267103 1192 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
GFRA3O60609 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
GFRA3O60609 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC17.43■□□□□ 0.38
GFRA3O60609 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
GFRA3O60609 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
GFRA3O60609 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC17.43■□□□□ 0.38
GFRA3O60609 AC068898.1-201ENST00000440750 335 ntTSL 3 BASIC17.43■□□□□ 0.38
GFRA3O60609 LINC00473-201ENST00000444465 798 ntTSL 3 BASIC17.43■□□□□ 0.38
GFRA3O60609 AC083973.1-206ENST00000518213 815 ntTSL 3 BASIC17.43■□□□□ 0.38
GFRA3O60609 MIR210HG-203ENST00000533920 816 ntTSL 2 BASIC17.43■□□□□ 0.38
GFRA3O60609 AL512356.2-201ENST00000546955 174 ntBASIC17.43■□□□□ 0.38
GFRA3O60609 AC140878.1-201ENST00000565277 250 ntBASIC17.43■□□□□ 0.38
GFRA3O60609 AC017083.2-201ENST00000608069 979 ntBASIC17.43■□□□□ 0.38
GFRA3O60609 AC116407.2-201ENST00000613639 860 ntBASIC17.43■□□□□ 0.38
GFRA3O60609 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
GFRA3O60609 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
GFRA3O60609 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC17.43■□□□□ 0.38
GFRA3O60609 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC17.43■□□□□ 0.38
GFRA3O60609 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
GFRA3O60609 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
GFRA3O60609 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
GFRA3O60609 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
GFRA3O60609 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
GFRA3O60609 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
GFRA3O60609 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC17.42■□□□□ 0.38
GFRA3O60609 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC17.42■□□□□ 0.38
GFRA3O60609 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC17.42■□□□□ 0.38
GFRA3O60609 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC17.42■□□□□ 0.38
GFRA3O60609 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC17.42■□□□□ 0.38
GFRA3O60609 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
GFRA3O60609 TPGS2-220ENST00000610723 1426 ntTSL 3 BASIC17.42■□□□□ 0.38
GFRA3O60609 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC17.42■□□□□ 0.38
GFRA3O60609 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC17.42■□□□□ 0.38
GFRA3O60609 MIR149-201ENST00000384879 89 ntBASIC17.42■□□□□ 0.38
GFRA3O60609 ZFAND2B-203ENST00000409206 1159 ntTSL 2 BASIC17.42■□□□□ 0.38
GFRA3O60609 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC17.42■□□□□ 0.38
GFRA3O60609 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC17.42■□□□□ 0.38
GFRA3O60609 AC020915.1-202ENST00000427361 922 ntAPPRIS ALT2 TSL 2 BASIC17.42■□□□□ 0.38
GFRA3O60609 AC007967.3-201ENST00000434308 558 ntBASIC17.42■□□□□ 0.38
GFRA3O60609 ZFAND2B-212ENST00000444522 1199 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
GFRA3O60609 AC069335.1-201ENST00000489972 472 ntBASIC17.42■□□□□ 0.38
GFRA3O60609 SERBP1P5-201ENST00000510079 1181 ntBASIC17.42■□□□□ 0.38
GFRA3O60609 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC17.42■□□□□ 0.38
GFRA3O60609 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC17.42■□□□□ 0.38
GFRA3O60609 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC17.42■□□□□ 0.38
GFRA3O60609 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
GFRA3O60609 LINC00602-201ENST00000629776 2065 ntBASIC17.42■□□□□ 0.38
GFRA3O60609 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
GFRA3O60609 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC17.42■□□□□ 0.38
GFRA3O60609 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
GFRA3O60609 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC17.42■□□□□ 0.38
GFRA3O60609 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC17.41■□□□□ 0.38
GFRA3O60609 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
GFRA3O60609 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
GFRA3O60609 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
GFRA3O60609 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
GFRA3O60609 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC17.41■□□□□ 0.38
GFRA3O60609 NCF1C-201ENST00000438382 1427 ntBASIC17.41■□□□□ 0.38
GFRA3O60609 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
GFRA3O60609 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC17.41■□□□□ 0.38
GFRA3O60609 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
GFRA3O60609 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
GFRA3O60609 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC17.41■□□□□ 0.38
GFRA3O60609 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC17.41■□□□□ 0.38
GFRA3O60609 AC112191.1-201ENST00000523689 701 ntBASIC17.41■□□□□ 0.38
GFRA3O60609 OR10S1-201ENST00000531945 1121 ntAPPRIS P2 BASIC17.41■□□□□ 0.38
GFRA3O60609 TMSB15B-204ENST00000540220 665 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
GFRA3O60609 CIPC-205ENST00000555437 566 ntTSL 3 BASIC17.41■□□□□ 0.38
GFRA3O60609 TMSB15B-205ENST00000563257 590 ntTSL 4 BASIC17.41■□□□□ 0.38
GFRA3O60609 IGHV3OR16-6-201ENST00000568775 360 ntBASIC17.41■□□□□ 0.38
GFRA3O60609 AC079336.1-201ENST00000583156 420 ntTSL 3 BASIC17.41■□□□□ 0.38
GFRA3O60609 IFT20-214ENST00000585089 1071 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
GFRA3O60609 VAT1-205ENST00000587173 1174 ntTSL 2 BASIC17.41■□□□□ 0.38
GFRA3O60609 AC092070.4-201ENST00000599803 507 ntTSL 5 BASIC17.41■□□□□ 0.38
GFRA3O60609 MED16-214ENST00000617672 554 ntTSL 5 BASIC17.41■□□□□ 0.38
GFRA3O60609 OR10S1-202ENST00000641123 1121 ntAPPRIS ALT2 BASIC17.41■□□□□ 0.38
GFRA3O60609 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
GFRA3O60609 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC17.41■□□□□ 0.38
GFRA3O60609 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC17.41■□□□□ 0.38
GFRA3O60609 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC17.41■□□□□ 0.38
GFRA3O60609 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
GFRA3O60609 Z82202.1-201ENST00000623446 1880 ntBASIC17.41■□□□□ 0.38
GFRA3O60609 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
GFRA3O60609 CALM1-216ENST00000626705 1341 ntTSL 5 BASIC17.41■□□□□ 0.38
GFRA3O60609 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
GFRA3O60609 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
GFRA3O60609 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 29.8 ms