Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
CLDN3O15551 BAG5-201ENST00000299204 4848 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CLDN3O15551 EFTUD1P1-204ENST00000560401 1798 ntBASIC19.72■□□□□ 0.75
CLDN3O15551 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
CLDN3O15551 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC19.72■□□□□ 0.75
CLDN3O15551 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC19.72■□□□□ 0.75
CLDN3O15551 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC19.72■□□□□ 0.75
CLDN3O15551 AC132938.6-201ENST00000623828 1655 ntBASIC19.72■□□□□ 0.75
CLDN3O15551 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CLDN3O15551 HCG11-201ENST00000411553 5696 ntBASIC19.72■□□□□ 0.75
CLDN3O15551 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
CLDN3O15551 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CLDN3O15551 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CLDN3O15551 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CLDN3O15551 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CLDN3O15551 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CLDN3O15551 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CLDN3O15551 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
CLDN3O15551 POR-209ENST00000439269 1858 ntTSL 2 BASIC19.72■□□□□ 0.75
CLDN3O15551 KRT18P65-201ENST00000439811 1286 ntBASIC19.72■□□□□ 0.75
CLDN3O15551 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC19.72■□□□□ 0.75
CLDN3O15551 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC19.72■□□□□ 0.75
CLDN3O15551 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC19.72■□□□□ 0.75
CLDN3O15551 TPSP2-201ENST00000561760 610 ntBASIC19.72■□□□□ 0.75
CLDN3O15551 KISS1R-203ENST00000606939 964 ntTSL 5 BASIC19.72■□□□□ 0.75
CLDN3O15551 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC19.72■□□□□ 0.75
CLDN3O15551 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC19.72■□□□□ 0.75
CLDN3O15551 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC19.72■□□□□ 0.75
CLDN3O15551 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
CLDN3O15551 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
CLDN3O15551 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
CLDN3O15551 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
CLDN3O15551 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
CLDN3O15551 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
CLDN3O15551 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CLDN3O15551 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
CLDN3O15551 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CLDN3O15551 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
CLDN3O15551 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC19.71■□□□□ 0.75
CLDN3O15551 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC19.71■□□□□ 0.75
CLDN3O15551 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC19.71■□□□□ 0.75
CLDN3O15551 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
CLDN3O15551 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
CLDN3O15551 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
CLDN3O15551 PPIH-202ENST00000372549 327 ntTSL 3 BASIC19.71■□□□□ 0.75
CLDN3O15551 CIB2-208ENST00000560618 804 ntTSL 2 BASIC19.71■□□□□ 0.75
CLDN3O15551 MPI-205ENST00000562606 1052 ntTSL 3 BASIC19.71■□□□□ 0.75
CLDN3O15551 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC19.71■□□□□ 0.75
CLDN3O15551 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC19.71■□□□□ 0.75
CLDN3O15551 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
CLDN3O15551 GNAS-AS1-203ENST00000598163 548 ntTSL 4 BASIC19.71■□□□□ 0.75
CLDN3O15551 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
CLDN3O15551 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC19.71■□□□□ 0.75
CLDN3O15551 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CLDN3O15551 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CLDN3O15551 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC19.71■□□□□ 0.75
CLDN3O15551 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
CLDN3O15551 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC19.71■□□□□ 0.75
CLDN3O15551 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CLDN3O15551 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC19.7■□□□□ 0.74
CLDN3O15551 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CLDN3O15551 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC19.7■□□□□ 0.74
CLDN3O15551 SP100-208ENST00000427101 1922 ntTSL 2 BASIC19.7■□□□□ 0.74
CLDN3O15551 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
CLDN3O15551 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
CLDN3O15551 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CLDN3O15551 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC19.7■□□□□ 0.74
CLDN3O15551 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC19.7■□□□□ 0.74
CLDN3O15551 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
CLDN3O15551 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
CLDN3O15551 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CLDN3O15551 OR10H5-201ENST00000308940 1132 ntAPPRIS P1 BASIC19.7■□□□□ 0.74
CLDN3O15551 CGB7-201ENST00000377280 918 ntAPPRIS P1 TSL 3 BASIC19.7■□□□□ 0.74
CLDN3O15551 ENO1-AS1-201ENST00000442636 456 ntTSL 2 BASIC19.7■□□□□ 0.74
CLDN3O15551 AC068472.1-201ENST00000474589 881 ntBASIC19.7■□□□□ 0.74
CLDN3O15551 KRT18P56-201ENST00000507275 550 ntBASIC19.7■□□□□ 0.74
CLDN3O15551 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC19.7■□□□□ 0.74
CLDN3O15551 NDUFB9-202ENST00000517367 636 ntTSL 3 BASIC19.7■□□□□ 0.74
CLDN3O15551 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
CLDN3O15551 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC19.7■□□□□ 0.74
CLDN3O15551 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
CLDN3O15551 AC011840.4-201ENST00000578471 627 ntBASIC19.7■□□□□ 0.74
CLDN3O15551 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
CLDN3O15551 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC19.7■□□□□ 0.74
CLDN3O15551 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CLDN3O15551 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC19.7■□□□□ 0.74
CLDN3O15551 FLYWCH1P1-201ENST00000460917 1874 ntBASIC19.7■□□□□ 0.74
CLDN3O15551 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CLDN3O15551 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC19.7■□□□□ 0.74
CLDN3O15551 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
CLDN3O15551 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CLDN3O15551 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CLDN3O15551 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
CLDN3O15551 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CLDN3O15551 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
CLDN3O15551 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC19.7■□□□□ 0.74
CLDN3O15551 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
CLDN3O15551 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC19.69■□□□□ 0.74
CLDN3O15551 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CLDN3O15551 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 51.5 ms