Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
MSH4O15457 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC20.25■□□□□ 0.83
MSH4O15457 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
MSH4O15457 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC20.25■□□□□ 0.83
MSH4O15457 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
MSH4O15457 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC20.25■□□□□ 0.83
MSH4O15457 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
MSH4O15457 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC20.25■□□□□ 0.83
MSH4O15457 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
MSH4O15457 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
MSH4O15457 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
MSH4O15457 DYNLL1-203ENST00000392509 814 ntAPPRIS P1 TSL 3 BASIC20.25■□□□□ 0.83
MSH4O15457 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
MSH4O15457 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
MSH4O15457 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC20.25■□□□□ 0.83
MSH4O15457 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC20.25■□□□□ 0.83
MSH4O15457 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
MSH4O15457 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC20.25■□□□□ 0.83
MSH4O15457 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC20.25■□□□□ 0.83
MSH4O15457 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC20.25■□□□□ 0.83
MSH4O15457 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
MSH4O15457 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC20.25■□□□□ 0.83
MSH4O15457 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC20.25■□□□□ 0.83
MSH4O15457 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
MSH4O15457 STK4-201ENST00000372801 2038 ntTSL 2 BASIC20.25■□□□□ 0.83
MSH4O15457 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
MSH4O15457 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
MSH4O15457 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
MSH4O15457 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
MSH4O15457 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC20.25■□□□□ 0.83
MSH4O15457 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC20.25■□□□□ 0.83
MSH4O15457 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC20.25■□□□□ 0.83
MSH4O15457 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC20.25■□□□□ 0.83
MSH4O15457 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC20.25■□□□□ 0.83
MSH4O15457 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
MSH4O15457 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC20.24■□□□□ 0.83
MSH4O15457 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
MSH4O15457 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC20.24■□□□□ 0.83
MSH4O15457 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
MSH4O15457 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
MSH4O15457 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC20.24■□□□□ 0.83
MSH4O15457 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
MSH4O15457 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
MSH4O15457 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC20.24■□□□□ 0.83
MSH4O15457 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
MSH4O15457 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
MSH4O15457 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
MSH4O15457 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
MSH4O15457 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
MSH4O15457 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC20.24■□□□□ 0.83
MSH4O15457 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
MSH4O15457 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC20.24■□□□□ 0.83
MSH4O15457 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC20.24■□□□□ 0.83
MSH4O15457 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC20.24■□□□□ 0.83
MSH4O15457 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
MSH4O15457 PRELID1P1-202ENST00000567272 903 ntBASIC20.24■□□□□ 0.83
MSH4O15457 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC20.24■□□□□ 0.83
MSH4O15457 AL138831.2-201ENST00000606564 490 ntBASIC20.24■□□□□ 0.83
MSH4O15457 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC20.24■□□□□ 0.83
MSH4O15457 AC100803.2-201ENST00000562459 1963 ntBASIC20.24■□□□□ 0.83
MSH4O15457 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC20.24■□□□□ 0.83
MSH4O15457 ASB7-203ENST00000558747 2133 ntTSL 5 BASIC20.24■□□□□ 0.83
MSH4O15457 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC20.24■□□□□ 0.83
MSH4O15457 PXK-206ENST00000463280 2825 ntTSL 2 BASIC20.24■□□□□ 0.83
MSH4O15457 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
MSH4O15457 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
MSH4O15457 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC20.24■□□□□ 0.83
MSH4O15457 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
MSH4O15457 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
MSH4O15457 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
MSH4O15457 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
MSH4O15457 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.83
MSH4O15457 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
MSH4O15457 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC20.23■□□□□ 0.83
MSH4O15457 AQP8-201ENST00000219660 1359 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
MSH4O15457 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
MSH4O15457 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC20.23■□□□□ 0.83
MSH4O15457 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
MSH4O15457 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
MSH4O15457 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC20.23■□□□□ 0.83
MSH4O15457 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
MSH4O15457 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
MSH4O15457 AC125634.1-201ENST00000438758 1403 ntBASIC20.23■□□□□ 0.83
MSH4O15457 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC20.23■□□□□ 0.83
MSH4O15457 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC20.23■□□□□ 0.83
MSH4O15457 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC20.23■□□□□ 0.83
MSH4O15457 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC20.23■□□□□ 0.83
MSH4O15457 FOSL1P1-201ENST00000511041 816 ntBASIC20.23■□□□□ 0.83
MSH4O15457 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC20.23■□□□□ 0.83
MSH4O15457 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC20.23■□□□□ 0.83
MSH4O15457 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC20.23■□□□□ 0.83
MSH4O15457 BNIP3P18-201ENST00000593976 575 ntBASIC20.23■□□□□ 0.83
MSH4O15457 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC20.23■□□□□ 0.83
MSH4O15457 AC099336.1-202ENST00000602961 463 ntBASIC20.23■□□□□ 0.83
MSH4O15457 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
MSH4O15457 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC20.23■□□□□ 0.83
MSH4O15457 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
MSH4O15457 AC022898.2-201ENST00000616822 1312 ntBASIC20.23■□□□□ 0.83
MSH4O15457 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
MSH4O15457 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 44.3 ms