Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 GMCL1P1-201ENST00000463439 1581 ntBASIC15.41■□□□□ 0.06
SDCBPO00560 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC15.4■□□□□ 0.06
SDCBPO00560 FAM135A-205ENST00000418814 6415 ntTSL 5 BASIC15.4■□□□□ 0.06
SDCBPO00560 TLCD2-201ENST00000330676 5971 ntAPPRIS P1 TSL 2 BASIC15.4■□□□□ 0.06
SDCBPO00560 STOX1-201ENST00000298596 3377 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
SDCBPO00560 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
SDCBPO00560 PHGDH-209ENST00000641074 1780 ntBASIC15.4■□□□□ 0.06
SDCBPO00560 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
SDCBPO00560 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC15.4■□□□□ 0.06
SDCBPO00560 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
SDCBPO00560 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
SDCBPO00560 BUB3-202ENST00000368859 667 ntTSL 3 BASIC15.4■□□□□ 0.06
SDCBPO00560 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC15.4■□□□□ 0.06
SDCBPO00560 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC15.4■□□□□ 0.06
SDCBPO00560 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC15.4■□□□□ 0.06
SDCBPO00560 MIR4785-201ENST00000585005 73 ntBASIC15.4■□□□□ 0.06
SDCBPO00560 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
SDCBPO00560 WNK1-206ENST00000535572 9886 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
SDCBPO00560 OR6D1P-203ENST00000641209 4860 ntBASIC15.4■□□□□ 0.06
SDCBPO00560 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
SDCBPO00560 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
SDCBPO00560 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
SDCBPO00560 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
SDCBPO00560 CACNA1G-206ENST00000416767 4899 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
SDCBPO00560 ERO1A-201ENST00000395686 5285 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
SDCBPO00560 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
SDCBPO00560 CAMK2D-201ENST00000296402 5820 ntAPPRIS P3 TSL 5 BASIC15.4■□□□□ 0.06
SDCBPO00560 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC15.4■□□□□ 0.06
SDCBPO00560 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
SDCBPO00560 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC15.4■□□□□ 0.06
SDCBPO00560 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC15.4■□□□□ 0.06
SDCBPO00560 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
SDCBPO00560 ENC1-207ENST00000618628 5657 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
SDCBPO00560 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
SDCBPO00560 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
SDCBPO00560 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
SDCBPO00560 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
SDCBPO00560 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
SDCBPO00560 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC15.39■□□□□ 0.05
SDCBPO00560 ACSL4-201ENST00000340800 5333 ntAPPRIS P4 TSL 5 BASIC15.39■□□□□ 0.05
SDCBPO00560 ORAI2-202ENST00000403646 2528 ntAPPRIS P1 TSL 2 BASIC15.39■□□□□ 0.05
SDCBPO00560 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC15.39■□□□□ 0.05
SDCBPO00560 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
SDCBPO00560 ZFP3-201ENST00000318833 5206 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
SDCBPO00560 UNC93B2-201ENST00000285383 730 ntBASIC15.39■□□□□ 0.05
SDCBPO00560 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC15.39■□□□□ 0.05
SDCBPO00560 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC15.39■□□□□ 0.05
SDCBPO00560 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC15.39■□□□□ 0.05
SDCBPO00560 TSPY7P-201ENST00000431358 1114 ntBASIC15.39■□□□□ 0.05
SDCBPO00560 MCCD1P1-208ENST00000445732 328 ntBASIC15.39■□□□□ 0.05
SDCBPO00560 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC15.39■□□□□ 0.05
SDCBPO00560 KRT18P41-201ENST00000518924 1277 ntBASIC15.39■□□□□ 0.05
SDCBPO00560 DHDH-203ENST00000522614 776 ntTSL 5 BASIC15.39■□□□□ 0.05
SDCBPO00560 CFL2-205ENST00000555765 632 ntTSL 2 BASIC15.39■□□□□ 0.05
SDCBPO00560 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC15.39■□□□□ 0.05
SDCBPO00560 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC15.39■□□□□ 0.05
SDCBPO00560 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
SDCBPO00560 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC15.39■□□□□ 0.05
SDCBPO00560 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
SDCBPO00560 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
SDCBPO00560 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
SDCBPO00560 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
SDCBPO00560 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC15.39■□□□□ 0.05
SDCBPO00560 TBC1D3P2-202ENST00000577902 1649 ntBASIC15.39■□□□□ 0.05
SDCBPO00560 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC15.39■□□□□ 0.05
SDCBPO00560 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC15.39■□□□□ 0.05
SDCBPO00560 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
SDCBPO00560 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
SDCBPO00560 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC15.38■□□□□ 0.05
SDCBPO00560 NME9-203ENST00000383180 2133 ntTSL 2 BASIC15.38■□□□□ 0.05
SDCBPO00560 HLA-DQB1-201ENST00000374943 1656 ntBASIC15.38■□□□□ 0.05
SDCBPO00560 AL109659.2-201ENST00000606809 1674 ntBASIC15.38■□□□□ 0.05
SDCBPO00560 CROCCP1-201ENST00000426910 5675 ntBASIC15.38■□□□□ 0.05
SDCBPO00560 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
SDCBPO00560 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC15.38■□□□□ 0.05
SDCBPO00560 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
SDCBPO00560 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC15.38■□□□□ 0.05
SDCBPO00560 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
SDCBPO00560 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
SDCBPO00560 ASXL1-212ENST00000620121 5374 ntAPPRIS ALT2 TSL 5 BASIC15.38■□□□□ 0.05
SDCBPO00560 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC15.38■□□□□ 0.05
SDCBPO00560 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
SDCBPO00560 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC15.38■□□□□ 0.05
SDCBPO00560 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC15.38■□□□□ 0.05
SDCBPO00560 CA15P1-201ENST00000481698 905 ntBASIC15.38■□□□□ 0.05
SDCBPO00560 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC15.38■□□□□ 0.05
SDCBPO00560 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC15.38■□□□□ 0.05
SDCBPO00560 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC15.38■□□□□ 0.05
SDCBPO00560 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
SDCBPO00560 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC15.38■□□□□ 0.05
SDCBPO00560 AC008622.2-201ENST00000617006 1229 ntBASIC15.38■□□□□ 0.05
SDCBPO00560 AC141586.5-201ENST00000624546 2050 ntBASIC15.38■□□□□ 0.05
SDCBPO00560 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC15.38■□□□□ 0.05
SDCBPO00560 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
SDCBPO00560 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC15.38■□□□□ 0.05
SDCBPO00560 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
SDCBPO00560 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC15.38■□□□□ 0.05
SDCBPO00560 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC15.38■□□□□ 0.05
SDCBPO00560 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC15.38■□□□□ 0.05
SDCBPO00560 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC15.38■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 27.4 ms