Protein–RNA interactions for Protein: C9J1S8

TRIM49D1, Tripartite motif-containing protein 49D, humanhuman

Predictions only

Length 452 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM49D1C9J1S8 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC18.12■□□□□ 0.49
TRIM49D1C9J1S8 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
TRIM49D1C9J1S8 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
TRIM49D1C9J1S8 KIRREL3-AS3-201ENST00000404882 831 ntBASIC18.12■□□□□ 0.49
TRIM49D1C9J1S8 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC18.12■□□□□ 0.49
TRIM49D1C9J1S8 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
TRIM49D1C9J1S8 CR769767.2-201ENST00000622735 460 ntBASIC18.12■□□□□ 0.49
TRIM49D1C9J1S8 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
TRIM49D1C9J1S8 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC18.12■□□□□ 0.49
TRIM49D1C9J1S8 CACNA2D2-201ENST00000266039 5476 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
TRIM49D1C9J1S8 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
TRIM49D1C9J1S8 ASL-204ENST00000395331 1538 ntTSL 5 BASIC18.12■□□□□ 0.49
TRIM49D1C9J1S8 APOLD1-202ENST00000356591 4646 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
TRIM49D1C9J1S8 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
TRIM49D1C9J1S8 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC18.12■□□□□ 0.49
TRIM49D1C9J1S8 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
TRIM49D1C9J1S8 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC18.12■□□□□ 0.49
TRIM49D1C9J1S8 F11R-202ENST00000368026 4835 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
TRIM49D1C9J1S8 AL023806.1-201ENST00000603994 1649 ntBASIC18.12■□□□□ 0.49
TRIM49D1C9J1S8 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
TRIM49D1C9J1S8 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC18.12■□□□□ 0.49
TRIM49D1C9J1S8 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
TRIM49D1C9J1S8 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
TRIM49D1C9J1S8 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
TRIM49D1C9J1S8 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC18.11■□□□□ 0.49
TRIM49D1C9J1S8 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
TRIM49D1C9J1S8 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
TRIM49D1C9J1S8 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
TRIM49D1C9J1S8 GNA13-201ENST00000439174 4922 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
TRIM49D1C9J1S8 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC18.11■□□□□ 0.49
TRIM49D1C9J1S8 AP003041.3-201ENST00000527151 707 ntBASIC18.11■□□□□ 0.49
TRIM49D1C9J1S8 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC18.11■□□□□ 0.49
TRIM49D1C9J1S8 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
TRIM49D1C9J1S8 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
TRIM49D1C9J1S8 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
TRIM49D1C9J1S8 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
TRIM49D1C9J1S8 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
TRIM49D1C9J1S8 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
TRIM49D1C9J1S8 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
TRIM49D1C9J1S8 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
TRIM49D1C9J1S8 MINDY2-202ENST00000450403 4820 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
TRIM49D1C9J1S8 RABEP1-202ENST00000537505 5365 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
TRIM49D1C9J1S8 PHKA1-201ENST00000339490 6121 ntAPPRIS ALT1 TSL 1 (best) BASIC18.11■□□□□ 0.49
TRIM49D1C9J1S8 KCNQ2-213ENST00000626839 9213 ntAPPRIS ALT1 TSL 1 (best) BASIC18.1■□□□□ 0.49
TRIM49D1C9J1S8 VAV2-203ENST00000406606 4691 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
TRIM49D1C9J1S8 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
TRIM49D1C9J1S8 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
TRIM49D1C9J1S8 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
TRIM49D1C9J1S8 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
TRIM49D1C9J1S8 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC18.1■□□□□ 0.49
TRIM49D1C9J1S8 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC18.1■□□□□ 0.49
TRIM49D1C9J1S8 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC18.1■□□□□ 0.49
TRIM49D1C9J1S8 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC18.1■□□□□ 0.49
TRIM49D1C9J1S8 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
TRIM49D1C9J1S8 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
TRIM49D1C9J1S8 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
TRIM49D1C9J1S8 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
TRIM49D1C9J1S8 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC18.1■□□□□ 0.49
TRIM49D1C9J1S8 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
TRIM49D1C9J1S8 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC18.1■□□□□ 0.49
TRIM49D1C9J1S8 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC18.1■□□□□ 0.49
TRIM49D1C9J1S8 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC18.1■□□□□ 0.49
TRIM49D1C9J1S8 AC009065.1-201ENST00000564055 1225 ntBASIC18.1■□□□□ 0.49
TRIM49D1C9J1S8 GRAMD4P8-201ENST00000605465 1115 ntBASIC18.1■□□□□ 0.49
TRIM49D1C9J1S8 AC113410.3-201ENST00000623366 203 ntBASIC18.1■□□□□ 0.49
TRIM49D1C9J1S8 DECR2-212ENST00000627716 352 ntTSL 2 BASIC18.1■□□□□ 0.49
TRIM49D1C9J1S8 FGFR1-206ENST00000397091 5702 ntAPPRIS ALT1 TSL 1 (best) BASIC18.1■□□□□ 0.49
TRIM49D1C9J1S8 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC18.1■□□□□ 0.49
TRIM49D1C9J1S8 PCDHA8-202ENST00000531613 5260 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
TRIM49D1C9J1S8 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC18.1■□□□□ 0.49
TRIM49D1C9J1S8 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
TRIM49D1C9J1S8 BAZ1B-201ENST00000339594 6102 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
TRIM49D1C9J1S8 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
TRIM49D1C9J1S8 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
TRIM49D1C9J1S8 METTL21A-203ENST00000411432 4805 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
TRIM49D1C9J1S8 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
TRIM49D1C9J1S8 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
TRIM49D1C9J1S8 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
TRIM49D1C9J1S8 KLHL21-202ENST00000377663 6445 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
TRIM49D1C9J1S8 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
TRIM49D1C9J1S8 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
TRIM49D1C9J1S8 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
TRIM49D1C9J1S8 DAPK2-205ENST00000558069 1473 ntTSL 5 BASIC18.09■□□□□ 0.49
TRIM49D1C9J1S8 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
TRIM49D1C9J1S8 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
TRIM49D1C9J1S8 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC18.09■□□□□ 0.49
TRIM49D1C9J1S8 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
TRIM49D1C9J1S8 ABHD17AP1-201ENST00000358206 933 ntBASIC18.09■□□□□ 0.49
TRIM49D1C9J1S8 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC18.09■□□□□ 0.49
TRIM49D1C9J1S8 PEX7-202ENST00000367756 680 ntTSL 3 BASIC18.09■□□□□ 0.49
TRIM49D1C9J1S8 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC18.09■□□□□ 0.49
TRIM49D1C9J1S8 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC18.09■□□□□ 0.49
TRIM49D1C9J1S8 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC18.09■□□□□ 0.49
TRIM49D1C9J1S8 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC18.09■□□□□ 0.49
TRIM49D1C9J1S8 WWOX-216ENST00000569818 525 ntBASIC18.09■□□□□ 0.49
TRIM49D1C9J1S8 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC18.09■□□□□ 0.49
TRIM49D1C9J1S8 AL023803.3-201ENST00000615559 522 ntBASIC18.09■□□□□ 0.49
TRIM49D1C9J1S8 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
TRIM49D1C9J1S8 LINC01168-201ENST00000461291 5254 ntTSL 2 BASIC18.09■□□□□ 0.49
TRIM49D1C9J1S8 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 61.8 ms