Protein–RNA interactions for Protein: A0A1B0GU29

SMIM28, Small integral membrane protein 28, humanhuman

Predictions only

Length 152 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMIM28A0A1B0GU29 DHRS7B-206ENST00000579303 1479 ntAPPRIS ALT1 TSL 5 BASIC19.32■□□□□ 0.68
SMIM28A0A1B0GU29 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SMIM28A0A1B0GU29 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SMIM28A0A1B0GU29 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SMIM28A0A1B0GU29 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
SMIM28A0A1B0GU29 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC19.32■□□□□ 0.68
SMIM28A0A1B0GU29 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SMIM28A0A1B0GU29 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SMIM28A0A1B0GU29 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SMIM28A0A1B0GU29 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
SMIM28A0A1B0GU29 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SMIM28A0A1B0GU29 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC19.31■□□□□ 0.68
SMIM28A0A1B0GU29 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
SMIM28A0A1B0GU29 AC097374.2-201ENST00000618617 1306 ntBASIC19.31■□□□□ 0.68
SMIM28A0A1B0GU29 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
SMIM28A0A1B0GU29 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
SMIM28A0A1B0GU29 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC19.31■□□□□ 0.68
SMIM28A0A1B0GU29 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SMIM28A0A1B0GU29 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
SMIM28A0A1B0GU29 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC19.31■□□□□ 0.68
SMIM28A0A1B0GU29 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SMIM28A0A1B0GU29 AC009078.2-202ENST00000463353 338 ntBASIC19.31■□□□□ 0.68
SMIM28A0A1B0GU29 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
SMIM28A0A1B0GU29 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC19.31■□□□□ 0.68
SMIM28A0A1B0GU29 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC19.31■□□□□ 0.68
SMIM28A0A1B0GU29 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC19.31■□□□□ 0.68
SMIM28A0A1B0GU29 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC19.31■□□□□ 0.68
SMIM28A0A1B0GU29 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC19.31■□□□□ 0.68
SMIM28A0A1B0GU29 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC19.31■□□□□ 0.68
SMIM28A0A1B0GU29 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC19.31■□□□□ 0.68
SMIM28A0A1B0GU29 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
SMIM28A0A1B0GU29 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SMIM28A0A1B0GU29 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
SMIM28A0A1B0GU29 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SMIM28A0A1B0GU29 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SMIM28A0A1B0GU29 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC19.31■□□□□ 0.68
SMIM28A0A1B0GU29 CALB2-202ENST00000349553 1373 ntTSL 5 BASIC19.31■□□□□ 0.68
SMIM28A0A1B0GU29 KRT8P47-201ENST00000604727 1398 ntBASIC19.31■□□□□ 0.68
SMIM28A0A1B0GU29 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC19.31■□□□□ 0.68
SMIM28A0A1B0GU29 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
SMIM28A0A1B0GU29 FLYWCH1P1-201ENST00000460917 1874 ntBASIC19.31■□□□□ 0.68
SMIM28A0A1B0GU29 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC19.3■□□□□ 0.68
SMIM28A0A1B0GU29 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SMIM28A0A1B0GU29 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC19.3■□□□□ 0.68
SMIM28A0A1B0GU29 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC19.3■□□□□ 0.68
SMIM28A0A1B0GU29 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
SMIM28A0A1B0GU29 AC022898.2-201ENST00000616822 1312 ntBASIC19.3■□□□□ 0.68
SMIM28A0A1B0GU29 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC19.3■□□□□ 0.68
SMIM28A0A1B0GU29 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC19.3■□□□□ 0.68
SMIM28A0A1B0GU29 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
SMIM28A0A1B0GU29 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SMIM28A0A1B0GU29 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
SMIM28A0A1B0GU29 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC19.3■□□□□ 0.68
SMIM28A0A1B0GU29 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
SMIM28A0A1B0GU29 AC009113.1-201ENST00000570267 2443 ntBASIC19.3■□□□□ 0.68
SMIM28A0A1B0GU29 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SMIM28A0A1B0GU29 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC19.3■□□□□ 0.68
SMIM28A0A1B0GU29 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SMIM28A0A1B0GU29 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
SMIM28A0A1B0GU29 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
SMIM28A0A1B0GU29 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC19.3■□□□□ 0.68
SMIM28A0A1B0GU29 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC19.3■□□□□ 0.68
SMIM28A0A1B0GU29 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC19.3■□□□□ 0.68
SMIM28A0A1B0GU29 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC19.3■□□□□ 0.68
SMIM28A0A1B0GU29 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC19.3■□□□□ 0.68
SMIM28A0A1B0GU29 GZMM-202ENST00000592501 941 ntTSL 3 BASIC19.3■□□□□ 0.68
SMIM28A0A1B0GU29 WDR88-203ENST00000592765 651 ntTSL 5 BASIC19.3■□□□□ 0.68
SMIM28A0A1B0GU29 CALM3-211ENST00000598871 561 ntTSL 4 BASIC19.3■□□□□ 0.68
SMIM28A0A1B0GU29 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC19.3■□□□□ 0.68
SMIM28A0A1B0GU29 VPS51-217ENST00000639871 243 ntTSL 5 BASIC19.3■□□□□ 0.68
SMIM28A0A1B0GU29 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC19.3■□□□□ 0.68
SMIM28A0A1B0GU29 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC19.3■□□□□ 0.68
SMIM28A0A1B0GU29 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
SMIM28A0A1B0GU29 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
SMIM28A0A1B0GU29 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
SMIM28A0A1B0GU29 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC19.3■□□□□ 0.68
SMIM28A0A1B0GU29 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC19.3■□□□□ 0.68
SMIM28A0A1B0GU29 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC19.3■□□□□ 0.68
SMIM28A0A1B0GU29 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SMIM28A0A1B0GU29 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
SMIM28A0A1B0GU29 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SMIM28A0A1B0GU29 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SMIM28A0A1B0GU29 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SMIM28A0A1B0GU29 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SMIM28A0A1B0GU29 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC19.3■□□□□ 0.68
SMIM28A0A1B0GU29 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC19.29■□□□□ 0.68
SMIM28A0A1B0GU29 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
SMIM28A0A1B0GU29 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC19.29■□□□□ 0.68
SMIM28A0A1B0GU29 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
SMIM28A0A1B0GU29 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC19.29■□□□□ 0.68
SMIM28A0A1B0GU29 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SMIM28A0A1B0GU29 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
SMIM28A0A1B0GU29 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SMIM28A0A1B0GU29 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC19.29■□□□□ 0.68
SMIM28A0A1B0GU29 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
SMIM28A0A1B0GU29 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SMIM28A0A1B0GU29 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC19.29■□□□□ 0.68
SMIM28A0A1B0GU29 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC19.29■□□□□ 0.68
SMIM28A0A1B0GU29 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SMIM28A0A1B0GU29 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 30.3 ms