Protein–RNA interactions for Protein: Q9UMD9

COL17A1, Collagen alpha-1(XVII) chain, humanhuman

Predicted RBP Predictions only

Length 1,497 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1Q9UMD9 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC27.24■■□□□ 1.95
COL17A1Q9UMD9 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC27.24■■□□□ 1.95
COL17A1Q9UMD9 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC27.24■■□□□ 1.95
COL17A1Q9UMD9 RPS15P9-201ENST00000494093 319 ntBASIC27.24■■□□□ 1.95
COL17A1Q9UMD9 SNHG15-207ENST00000582727 1039 ntTSL 2 BASIC27.24■■□□□ 1.95
COL17A1Q9UMD9 SNHG28-203ENST00000621242 708 ntAPPRIS P1 TSL 5 BASIC27.24■■□□□ 1.95
COL17A1Q9UMD9 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC27.24■■□□□ 1.95
COL17A1Q9UMD9 AC125437.2-201ENST00000625180 2167 ntBASIC27.24■■□□□ 1.95
COL17A1Q9UMD9 BCAR1-209ENST00000546196 1340 ntBASIC27.23■■□□□ 1.95
COL17A1Q9UMD9 ASL-204ENST00000395331 1538 ntTSL 5 BASIC27.23■■□□□ 1.95
COL17A1Q9UMD9 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC27.23■■□□□ 1.95
COL17A1Q9UMD9 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC27.23■■□□□ 1.95
COL17A1Q9UMD9 THOC7-201ENST00000295899 990 ntAPPRIS P1 TSL 1 (best) BASIC27.23■■□□□ 1.95
COL17A1Q9UMD9 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC27.23■■□□□ 1.95
COL17A1Q9UMD9 RPL21-203ENST00000319826 806 ntAPPRIS P1 TSL 2 BASIC27.23■■□□□ 1.95
COL17A1Q9UMD9 TFAMP1-201ENST00000412727 736 ntBASIC27.23■■□□□ 1.95
COL17A1Q9UMD9 AC073283.1-201ENST00000421759 860 ntTSL 3 BASIC27.23■■□□□ 1.95
COL17A1Q9UMD9 AC016735.2-201ENST00000438736 569 ntTSL 4 BASIC27.23■■□□□ 1.95
COL17A1Q9UMD9 PRKAG2-AS1-202ENST00000467458 1064 ntTSL 1 (best) BASIC27.23■■□□□ 1.95
COL17A1Q9UMD9 ZNF710-AS1-201ENST00000558334 1168 ntTSL 1 (best) BASIC27.23■■□□□ 1.95
COL17A1Q9UMD9 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC27.23■■□□□ 1.95
COL17A1Q9UMD9 AC005544.2-201ENST00000579138 229 ntTSL 5 BASIC27.23■■□□□ 1.95
COL17A1Q9UMD9 AL606495.2-201ENST00000605867 535 ntBASIC27.23■■□□□ 1.95
COL17A1Q9UMD9 CECR7-204ENST00000609932 568 ntTSL 2 BASIC27.23■■□□□ 1.95
COL17A1Q9UMD9 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC27.23■■□□□ 1.95
COL17A1Q9UMD9 SERF2-217ENST00000630046 862 ntTSL 5 BASIC27.23■■□□□ 1.95
COL17A1Q9UMD9 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC27.23■■□□□ 1.95
COL17A1Q9UMD9 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC27.23■■□□□ 1.95
COL17A1Q9UMD9 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC27.22■■□□□ 1.95
COL17A1Q9UMD9 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC27.22■■□□□ 1.95
COL17A1Q9UMD9 TADA2B-201ENST00000310074 4350 ntAPPRIS P1 TSL 1 (best) BASIC27.22■■□□□ 1.95
COL17A1Q9UMD9 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC27.22■■□□□ 1.95
COL17A1Q9UMD9 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC27.22■■□□□ 1.95
COL17A1Q9UMD9 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC27.22■■□□□ 1.95
COL17A1Q9UMD9 AC009102.3-201ENST00000623118 1491 ntBASIC27.22■■□□□ 1.95
COL17A1Q9UMD9 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC27.22■■□□□ 1.95
COL17A1Q9UMD9 GRAP-202ENST00000395635 834 ntTSL 2 BASIC27.22■■□□□ 1.95
COL17A1Q9UMD9 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC27.22■■□□□ 1.95
COL17A1Q9UMD9 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC27.22■■□□□ 1.95
COL17A1Q9UMD9 AP000892.1-201ENST00000504906 488 ntTSL 3 BASIC27.22■■□□□ 1.95
COL17A1Q9UMD9 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC27.22■■□□□ 1.95
COL17A1Q9UMD9 OR7E47P-204ENST00000575924 449 ntBASIC27.22■■□□□ 1.95
COL17A1Q9UMD9 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC27.22■■□□□ 1.95
COL17A1Q9UMD9 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC27.22■■□□□ 1.95
COL17A1Q9UMD9 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC27.22■■□□□ 1.95
COL17A1Q9UMD9 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC27.22■■□□□ 1.95
COL17A1Q9UMD9 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC27.22■■□□□ 1.95
COL17A1Q9UMD9 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC27.22■■□□□ 1.95
COL17A1Q9UMD9 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC27.22■■□□□ 1.95
COL17A1Q9UMD9 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC27.22■■□□□ 1.95
COL17A1Q9UMD9 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC27.21■■□□□ 1.95
COL17A1Q9UMD9 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC27.21■■□□□ 1.95
COL17A1Q9UMD9 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC27.21■■□□□ 1.95
COL17A1Q9UMD9 SDHAP2-201ENST00000455183 2001 ntBASIC27.21■■□□□ 1.95
COL17A1Q9UMD9 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC27.21■■□□□ 1.95
COL17A1Q9UMD9 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC27.21■■□□□ 1.95
COL17A1Q9UMD9 KRT18P65-201ENST00000439811 1286 ntBASIC27.21■■□□□ 1.95
COL17A1Q9UMD9 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC27.21■■□□□ 1.95
COL17A1Q9UMD9 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC27.21■■□□□ 1.95
COL17A1Q9UMD9 AC112698.1-201ENST00000510299 916 ntBASIC27.21■■□□□ 1.95
COL17A1Q9UMD9 ATG10-207ENST00000513443 978 ntTSL 1 (best) BASIC27.21■■□□□ 1.95
COL17A1Q9UMD9 AC096734.2-201ENST00000562054 433 ntBASIC27.21■■□□□ 1.95
COL17A1Q9UMD9 AC010654.1-201ENST00000615722 808 ntBASIC27.21■■□□□ 1.95
COL17A1Q9UMD9 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC27.21■■□□□ 1.95
COL17A1Q9UMD9 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC27.21■■□□□ 1.95
COL17A1Q9UMD9 ADM-208ENST00000534464 1640 ntTSL 2 BASIC27.21■■□□□ 1.95
COL17A1Q9UMD9 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC27.21■■□□□ 1.95
COL17A1Q9UMD9 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC27.21■■□□□ 1.95
COL17A1Q9UMD9 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC27.21■■□□□ 1.95
COL17A1Q9UMD9 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC27.21■■□□□ 1.95
COL17A1Q9UMD9 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC27.21■■□□□ 1.95
COL17A1Q9UMD9 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC27.2■■□□□ 1.95
COL17A1Q9UMD9 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC27.2■■□□□ 1.95
COL17A1Q9UMD9 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC27.2■■□□□ 1.95
COL17A1Q9UMD9 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC27.2■■□□□ 1.95
COL17A1Q9UMD9 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC27.2■■□□□ 1.95
COL17A1Q9UMD9 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC27.2■■□□□ 1.95
COL17A1Q9UMD9 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC27.2■■□□□ 1.95
COL17A1Q9UMD9 SMN2-210ENST00000511812 867 ntTSL 2 BASIC27.2■■□□□ 1.95
COL17A1Q9UMD9 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC27.2■■□□□ 1.95
COL17A1Q9UMD9 GRIFIN-202ENST00000614228 461 ntAPPRIS P1 TSL 5 BASIC27.2■■□□□ 1.95
COL17A1Q9UMD9 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC27.2■■□□□ 1.95
COL17A1Q9UMD9 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC27.2■■□□□ 1.95
COL17A1Q9UMD9 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC27.2■■□□□ 1.94
COL17A1Q9UMD9 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC27.2■■□□□ 1.94
COL17A1Q9UMD9 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC27.2■■□□□ 1.94
COL17A1Q9UMD9 PDGFA-201ENST00000354513 1308 ntTSL 1 (best) BASIC27.2■■□□□ 1.94
COL17A1Q9UMD9 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC27.2■■□□□ 1.94
COL17A1Q9UMD9 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC27.2■■□□□ 1.94
COL17A1Q9UMD9 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC27.19■■□□□ 1.94
COL17A1Q9UMD9 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC27.19■■□□□ 1.94
COL17A1Q9UMD9 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC27.19■■□□□ 1.94
COL17A1Q9UMD9 CCDC159-201ENST00000458408 1062 ntAPPRIS P1 TSL 5 BASIC27.19■■□□□ 1.94
COL17A1Q9UMD9 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC27.19■■□□□ 1.94
COL17A1Q9UMD9 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC27.19■■□□□ 1.94
COL17A1Q9UMD9 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC27.19■■□□□ 1.94
COL17A1Q9UMD9 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC27.19■■□□□ 1.94
COL17A1Q9UMD9 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC27.19■■□□□ 1.94
COL17A1Q9UMD9 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC27.19■■□□□ 1.94
COL17A1Q9UMD9 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC27.19■■□□□ 1.94
Retrieved 100 of 98,524 protein–RNA pairs in 20.9 ms