Protein–RNA interactions for Protein: Q92541

RTF1, RNA polymerase-associated protein RTF1 homolog, humanhuman

Known RBP Predictions only

Length 710 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1Q92541 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
RTF1Q92541 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC23.54■■□□□ 1.36
RTF1Q92541 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC23.54■■□□□ 1.36
RTF1Q92541 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
RTF1Q92541 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC23.54■■□□□ 1.36
RTF1Q92541 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC23.54■■□□□ 1.36
RTF1Q92541 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC23.54■■□□□ 1.36
RTF1Q92541 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC23.54■■□□□ 1.36
RTF1Q92541 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC23.54■■□□□ 1.36
RTF1Q92541 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
RTF1Q92541 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC23.54■■□□□ 1.36
RTF1Q92541 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC23.54■■□□□ 1.36
RTF1Q92541 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
RTF1Q92541 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC23.54■■□□□ 1.36
RTF1Q92541 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC23.54■■□□□ 1.36
RTF1Q92541 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC23.54■■□□□ 1.36
RTF1Q92541 CALB2-202ENST00000349553 1373 ntTSL 5 BASIC23.53■■□□□ 1.36
RTF1Q92541 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC23.53■■□□□ 1.36
RTF1Q92541 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC23.53■■□□□ 1.36
RTF1Q92541 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC23.53■■□□□ 1.36
RTF1Q92541 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC23.53■■□□□ 1.36
RTF1Q92541 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
RTF1Q92541 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC23.53■■□□□ 1.36
RTF1Q92541 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC23.53■■□□□ 1.36
RTF1Q92541 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC23.53■■□□□ 1.36
RTF1Q92541 AC093010.1-201ENST00000473625 1624 ntBASIC23.53■■□□□ 1.36
RTF1Q92541 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
RTF1Q92541 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
RTF1Q92541 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC23.53■■□□□ 1.36
RTF1Q92541 RCN1P2-201ENST00000398357 915 ntBASIC23.53■■□□□ 1.36
RTF1Q92541 DANCR-204ENST00000444958 709 ntTSL 3 BASIC23.53■■□□□ 1.36
RTF1Q92541 AC079781.3-201ENST00000449110 356 ntBASIC23.53■■□□□ 1.36
RTF1Q92541 MEG3-211ENST00000452514 461 ntTSL 3 BASIC23.53■■□□□ 1.36
RTF1Q92541 SAPCD2P3-201ENST00000455031 850 ntBASIC23.53■■□□□ 1.36
RTF1Q92541 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC23.53■■□□□ 1.36
RTF1Q92541 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC23.53■■□□□ 1.36
RTF1Q92541 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC23.53■■□□□ 1.36
RTF1Q92541 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC23.53■■□□□ 1.36
RTF1Q92541 REXO1L6P-202ENST00000619970 1078 ntBASIC23.53■■□□□ 1.36
RTF1Q92541 WWC1-201ENST00000265293 7130 ntAPPRIS P3 TSL 1 (best) BASIC23.53■■□□□ 1.36
RTF1Q92541 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC23.53■■□□□ 1.36
RTF1Q92541 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC23.53■■□□□ 1.36
RTF1Q92541 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
RTF1Q92541 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC23.53■■□□□ 1.36
RTF1Q92541 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC23.53■■□□□ 1.36
RTF1Q92541 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC23.53■■□□□ 1.36
RTF1Q92541 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC23.53■■□□□ 1.36
RTF1Q92541 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
RTF1Q92541 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC23.53■■□□□ 1.36
RTF1Q92541 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC23.53■■□□□ 1.36
RTF1Q92541 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC23.52■■□□□ 1.36
RTF1Q92541 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC23.52■■□□□ 1.36
RTF1Q92541 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC23.52■■□□□ 1.36
RTF1Q92541 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC23.52■■□□□ 1.36
RTF1Q92541 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC23.52■■□□□ 1.36
RTF1Q92541 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
RTF1Q92541 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC23.52■■□□□ 1.36
RTF1Q92541 KRT8P10-201ENST00000450021 1447 ntBASIC23.52■■□□□ 1.36
RTF1Q92541 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC23.52■■□□□ 1.36
RTF1Q92541 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC23.52■■□□□ 1.36
RTF1Q92541 AKR1C7P-201ENST00000305623 895 ntBASIC23.52■■□□□ 1.36
RTF1Q92541 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
RTF1Q92541 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC23.52■■□□□ 1.36
RTF1Q92541 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC23.52■■□□□ 1.36
RTF1Q92541 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC23.52■■□□□ 1.36
RTF1Q92541 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC23.52■■□□□ 1.36
RTF1Q92541 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
RTF1Q92541 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC23.52■■□□□ 1.36
RTF1Q92541 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
RTF1Q92541 MFHAS1-201ENST00000276282 6414 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
RTF1Q92541 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC23.52■■□□□ 1.36
RTF1Q92541 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
RTF1Q92541 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC23.52■■□□□ 1.36
RTF1Q92541 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC23.52■■□□□ 1.36
RTF1Q92541 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
RTF1Q92541 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC23.52■■□□□ 1.36
RTF1Q92541 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC23.52■■□□□ 1.36
RTF1Q92541 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC23.52■■□□□ 1.35
RTF1Q92541 AC020763.4-201ENST00000623414 4170 ntBASIC23.52■■□□□ 1.35
RTF1Q92541 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
RTF1Q92541 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC23.51■■□□□ 1.35
RTF1Q92541 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC23.51■■□□□ 1.35
RTF1Q92541 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC23.51■■□□□ 1.35
RTF1Q92541 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC23.51■■□□□ 1.35
RTF1Q92541 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
RTF1Q92541 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
RTF1Q92541 EMD-201ENST00000369835 966 ntTSL 3 BASIC23.51■■□□□ 1.35
RTF1Q92541 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC23.51■■□□□ 1.35
RTF1Q92541 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC23.51■■□□□ 1.35
RTF1Q92541 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
RTF1Q92541 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC23.51■■□□□ 1.35
RTF1Q92541 AL160237.2-201ENST00000556165 472 ntBASIC23.51■■□□□ 1.35
RTF1Q92541 COX5A-204ENST00000567270 579 ntTSL 3 BASIC23.51■■□□□ 1.35
RTF1Q92541 AC104692.2-201ENST00000603054 253 ntBASIC23.51■■□□□ 1.35
RTF1Q92541 AL121912.1-201ENST00000603683 238 ntBASIC23.51■■□□□ 1.35
RTF1Q92541 SERPINB6-207ENST00000612421 1570 ntTSL 2 BASIC23.51■■□□□ 1.35
RTF1Q92541 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC23.51■■□□□ 1.35
RTF1Q92541 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC23.51■■□□□ 1.35
RTF1Q92541 FIGNL2-201ENST00000564840 4693 ntAPPRIS P1 TSL 5 BASIC23.51■■□□□ 1.35
RTF1Q92541 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC23.51■■□□□ 1.35
Retrieved 100 of 98,524 protein–RNA pairs in 28.8 ms