Protein–RNA interactions for Protein: Q8N998

CCDC89, Coiled-coil domain-containing protein 89, humanhuman

Predictions only

Length 374 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC89Q8N998 AC012317.2-201ENST00000623305 2251 ntBASIC18.8■□□□□ 0.6
CCDC89Q8N998 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
CCDC89Q8N998 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
CCDC89Q8N998 ZNF354C-201ENST00000315475 5411 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CCDC89Q8N998 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC18.79■□□□□ 0.6
CCDC89Q8N998 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CCDC89Q8N998 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CCDC89Q8N998 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC18.79■□□□□ 0.6
CCDC89Q8N998 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC18.79■□□□□ 0.6
CCDC89Q8N998 AC093010.1-201ENST00000473625 1624 ntBASIC18.79■□□□□ 0.6
CCDC89Q8N998 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
CCDC89Q8N998 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
CCDC89Q8N998 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CCDC89Q8N998 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CCDC89Q8N998 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CCDC89Q8N998 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC18.79■□□□□ 0.6
CCDC89Q8N998 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC18.79■□□□□ 0.6
CCDC89Q8N998 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC18.79■□□□□ 0.6
CCDC89Q8N998 BX088651.1-201ENST00000540551 451 ntBASIC18.79■□□□□ 0.6
CCDC89Q8N998 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
CCDC89Q8N998 WWOX-216ENST00000569818 525 ntBASIC18.79■□□□□ 0.6
CCDC89Q8N998 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CCDC89Q8N998 AP000525.1-201ENST00000608286 694 ntBASIC18.79■□□□□ 0.6
CCDC89Q8N998 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
CCDC89Q8N998 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
CCDC89Q8N998 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC18.79■□□□□ 0.6
CCDC89Q8N998 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
CCDC89Q8N998 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
CCDC89Q8N998 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
CCDC89Q8N998 KRT18P55-202ENST00000578578 1546 ntBASIC18.79■□□□□ 0.6
CCDC89Q8N998 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CCDC89Q8N998 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC18.79■□□□□ 0.6
CCDC89Q8N998 NME9-203ENST00000383180 2133 ntTSL 2 BASIC18.79■□□□□ 0.6
CCDC89Q8N998 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC18.78■□□□□ 0.6
CCDC89Q8N998 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC89Q8N998 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC89Q8N998 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC89Q8N998 SMCHD1-201ENST00000320876 8821 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
CCDC89Q8N998 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC18.78■□□□□ 0.6
CCDC89Q8N998 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC89Q8N998 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC89Q8N998 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC89Q8N998 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC18.78■□□□□ 0.6
CCDC89Q8N998 PRR31-201ENST00000371629 978 ntTSL 2 BASIC18.78■□□□□ 0.6
CCDC89Q8N998 TSPY7P-201ENST00000431358 1114 ntBASIC18.78■□□□□ 0.6
CCDC89Q8N998 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC18.78■□□□□ 0.6
CCDC89Q8N998 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC89Q8N998 AC008550.1-201ENST00000511500 884 ntBASIC18.78■□□□□ 0.6
CCDC89Q8N998 DHDH-203ENST00000522614 776 ntTSL 5 BASIC18.78■□□□□ 0.6
CCDC89Q8N998 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC18.78■□□□□ 0.6
CCDC89Q8N998 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC18.78■□□□□ 0.6
CCDC89Q8N998 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC18.78■□□□□ 0.6
CCDC89Q8N998 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC18.78■□□□□ 0.6
CCDC89Q8N998 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC89Q8N998 AC116562.4-202ENST00000641738 218 ntBASIC18.78■□□□□ 0.6
CCDC89Q8N998 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC89Q8N998 MARCH1-203ENST00000503008 5877 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC89Q8N998 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC18.78■□□□□ 0.6
CCDC89Q8N998 ASXL1-212ENST00000620121 5374 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
CCDC89Q8N998 SP100-208ENST00000427101 1922 ntTSL 2 BASIC18.78■□□□□ 0.6
CCDC89Q8N998 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC89Q8N998 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
CCDC89Q8N998 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CCDC89Q8N998 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
CCDC89Q8N998 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC18.77■□□□□ 0.6
CCDC89Q8N998 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CCDC89Q8N998 RAB22A-201ENST00000244040 8670 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CCDC89Q8N998 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CCDC89Q8N998 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC18.77■□□□□ 0.6
CCDC89Q8N998 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
CCDC89Q8N998 AC092338.2-201ENST00000568827 1415 ntBASIC18.77■□□□□ 0.6
CCDC89Q8N998 LCORL-203ENST00000382226 5009 ntAPPRIS P2 TSL 5 BASIC18.77■□□□□ 0.6
CCDC89Q8N998 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
CCDC89Q8N998 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
CCDC89Q8N998 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
CCDC89Q8N998 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
CCDC89Q8N998 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
CCDC89Q8N998 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC18.77■□□□□ 0.6
CCDC89Q8N998 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC18.77■□□□□ 0.6
CCDC89Q8N998 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC18.77■□□□□ 0.6
CCDC89Q8N998 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC18.77■□□□□ 0.6
CCDC89Q8N998 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC18.77■□□□□ 0.6
CCDC89Q8N998 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
CCDC89Q8N998 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC18.77■□□□□ 0.6
CCDC89Q8N998 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC18.77■□□□□ 0.6
CCDC89Q8N998 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC18.77■□□□□ 0.6
CCDC89Q8N998 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CCDC89Q8N998 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC18.77■□□□□ 0.6
CCDC89Q8N998 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.6
CCDC89Q8N998 ZFP91-201ENST00000316059 5220 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
CCDC89Q8N998 BRPF1-201ENST00000383829 4736 ntAPPRIS ALT1 TSL 1 (best) BASIC18.77■□□□□ 0.59
CCDC89Q8N998 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
CCDC89Q8N998 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.59
CCDC89Q8N998 ARHGAP35-201ENST00000404338 8889 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
CCDC89Q8N998 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.59
CCDC89Q8N998 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
CCDC89Q8N998 MAPT-205ENST00000351559 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
CCDC89Q8N998 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
CCDC89Q8N998 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
CCDC89Q8N998 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC18.76■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 41.1 ms