Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC18.12■□□□□ 0.49
HDDC3Q8N4P3 AC114341.1-201ENST00000618070 349 ntBASIC18.12■□□□□ 0.49
HDDC3Q8N4P3 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
HDDC3Q8N4P3 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
HDDC3Q8N4P3 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
HDDC3Q8N4P3 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
HDDC3Q8N4P3 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
HDDC3Q8N4P3 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
HDDC3Q8N4P3 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC18.12■□□□□ 0.49
HDDC3Q8N4P3 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
HDDC3Q8N4P3 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC18.12■□□□□ 0.49
HDDC3Q8N4P3 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
HDDC3Q8N4P3 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
HDDC3Q8N4P3 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC18.11■□□□□ 0.49
HDDC3Q8N4P3 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC18.11■□□□□ 0.49
HDDC3Q8N4P3 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
HDDC3Q8N4P3 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
HDDC3Q8N4P3 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC18.11■□□□□ 0.49
HDDC3Q8N4P3 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
HDDC3Q8N4P3 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
HDDC3Q8N4P3 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
HDDC3Q8N4P3 FAM220CP-201ENST00000395253 831 ntBASIC18.11■□□□□ 0.49
HDDC3Q8N4P3 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
HDDC3Q8N4P3 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
HDDC3Q8N4P3 KRT18P67-201ENST00000432816 1264 ntBASIC18.11■□□□□ 0.49
HDDC3Q8N4P3 KRT18P65-201ENST00000439811 1286 ntBASIC18.11■□□□□ 0.49
HDDC3Q8N4P3 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC18.11■□□□□ 0.49
HDDC3Q8N4P3 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC18.11■□□□□ 0.49
HDDC3Q8N4P3 HEXA-210ENST00000567213 1000 ntTSL 3 BASIC18.11■□□□□ 0.49
HDDC3Q8N4P3 TP73-AS1-207ENST00000624167 988 ntBASIC18.11■□□□□ 0.49
HDDC3Q8N4P3 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
HDDC3Q8N4P3 TP73-AS1-210ENST00000637775 1455 ntBASIC18.11■□□□□ 0.49
HDDC3Q8N4P3 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
HDDC3Q8N4P3 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
HDDC3Q8N4P3 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC18.11■□□□□ 0.49
HDDC3Q8N4P3 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
HDDC3Q8N4P3 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC18.11■□□□□ 0.49
HDDC3Q8N4P3 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
HDDC3Q8N4P3 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC18.11■□□□□ 0.49
HDDC3Q8N4P3 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC18.11■□□□□ 0.49
HDDC3Q8N4P3 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
HDDC3Q8N4P3 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
HDDC3Q8N4P3 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
HDDC3Q8N4P3 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
HDDC3Q8N4P3 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
HDDC3Q8N4P3 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
HDDC3Q8N4P3 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
HDDC3Q8N4P3 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC18.1■□□□□ 0.49
HDDC3Q8N4P3 BX323043.1-201ENST00000641006 1765 ntBASIC18.1■□□□□ 0.49
HDDC3Q8N4P3 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC18.1■□□□□ 0.49
HDDC3Q8N4P3 RBL2-201ENST00000262133 4906 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
HDDC3Q8N4P3 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
HDDC3Q8N4P3 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
HDDC3Q8N4P3 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
HDDC3Q8N4P3 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
HDDC3Q8N4P3 KLHDC10-201ENST00000335420 6437 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
HDDC3Q8N4P3 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
HDDC3Q8N4P3 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
HDDC3Q8N4P3 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
HDDC3Q8N4P3 RCN1P2-201ENST00000398357 915 ntBASIC18.1■□□□□ 0.49
HDDC3Q8N4P3 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC18.1■□□□□ 0.49
HDDC3Q8N4P3 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC18.1■□□□□ 0.49
HDDC3Q8N4P3 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
HDDC3Q8N4P3 RNPS1P1-201ENST00000507437 918 ntBASIC18.1■□□□□ 0.49
HDDC3Q8N4P3 SLC25A1P1-201ENST00000528351 927 ntBASIC18.1■□□□□ 0.49
HDDC3Q8N4P3 TERC-201ENST00000602385 541 ntBASIC18.1■□□□□ 0.49
HDDC3Q8N4P3 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC18.1■□□□□ 0.49
HDDC3Q8N4P3 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
HDDC3Q8N4P3 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
HDDC3Q8N4P3 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC18.1■□□□□ 0.49
HDDC3Q8N4P3 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC18.1■□□□□ 0.49
HDDC3Q8N4P3 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
HDDC3Q8N4P3 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
HDDC3Q8N4P3 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC18.09■□□□□ 0.49
HDDC3Q8N4P3 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC18.09■□□□□ 0.49
HDDC3Q8N4P3 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC18.09■□□□□ 0.49
HDDC3Q8N4P3 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
HDDC3Q8N4P3 AQP5-201ENST00000293599 1450 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
HDDC3Q8N4P3 PMS2P7-201ENST00000506558 1336 ntBASIC18.09■□□□□ 0.49
HDDC3Q8N4P3 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
HDDC3Q8N4P3 EMD-201ENST00000369835 966 ntTSL 3 BASIC18.09■□□□□ 0.49
HDDC3Q8N4P3 KIRREL3-AS3-201ENST00000404882 831 ntBASIC18.09■□□□□ 0.49
HDDC3Q8N4P3 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
HDDC3Q8N4P3 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
HDDC3Q8N4P3 AC132008.2-207ENST00000454517 770 ntBASIC18.09■□□□□ 0.49
HDDC3Q8N4P3 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC18.09■□□□□ 0.49
HDDC3Q8N4P3 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC18.09■□□□□ 0.49
HDDC3Q8N4P3 AC009533.2-201ENST00000543664 586 ntBASIC18.09■□□□□ 0.49
HDDC3Q8N4P3 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC18.09■□□□□ 0.49
HDDC3Q8N4P3 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC18.09■□□□□ 0.49
HDDC3Q8N4P3 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC18.09■□□□□ 0.49
HDDC3Q8N4P3 COX5A-204ENST00000567270 579 ntTSL 3 BASIC18.09■□□□□ 0.49
HDDC3Q8N4P3 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC18.09■□□□□ 0.49
HDDC3Q8N4P3 AC243773.2-203ENST00000612281 640 ntTSL 3 BASIC18.09■□□□□ 0.49
HDDC3Q8N4P3 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC18.09■□□□□ 0.49
HDDC3Q8N4P3 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
HDDC3Q8N4P3 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC18.09■□□□□ 0.49
HDDC3Q8N4P3 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
HDDC3Q8N4P3 SERPINB6-207ENST00000612421 1570 ntTSL 2 BASIC18.08■□□□□ 0.49
HDDC3Q8N4P3 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC18.08■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 57.9 ms