Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC17.71■□□□□ 0.43
PTCHD3Q3KNS1 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC17.71■□□□□ 0.43
PTCHD3Q3KNS1 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC17.71■□□□□ 0.43
PTCHD3Q3KNS1 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
PTCHD3Q3KNS1 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC17.71■□□□□ 0.42
PTCHD3Q3KNS1 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
PTCHD3Q3KNS1 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.42
PTCHD3Q3KNS1 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC17.71■□□□□ 0.42
PTCHD3Q3KNS1 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
PTCHD3Q3KNS1 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
PTCHD3Q3KNS1 PBK-203ENST00000522944 1499 ntTSL 2 BASIC17.7■□□□□ 0.42
PTCHD3Q3KNS1 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
PTCHD3Q3KNS1 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
PTCHD3Q3KNS1 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
PTCHD3Q3KNS1 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
PTCHD3Q3KNS1 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC17.7■□□□□ 0.42
PTCHD3Q3KNS1 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
PTCHD3Q3KNS1 BET1L-202ENST00000332865 533 ntTSL 5 BASIC17.7■□□□□ 0.42
PTCHD3Q3KNS1 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
PTCHD3Q3KNS1 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
PTCHD3Q3KNS1 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
PTCHD3Q3KNS1 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC17.7■□□□□ 0.42
PTCHD3Q3KNS1 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC17.7■□□□□ 0.42
PTCHD3Q3KNS1 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
PTCHD3Q3KNS1 PTK2-216ENST00000519881 863 ntTSL 3 BASIC17.7■□□□□ 0.42
PTCHD3Q3KNS1 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC17.7■□□□□ 0.42
PTCHD3Q3KNS1 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC17.7■□□□□ 0.42
PTCHD3Q3KNS1 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
PTCHD3Q3KNS1 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC17.7■□□□□ 0.42
PTCHD3Q3KNS1 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC17.7■□□□□ 0.42
PTCHD3Q3KNS1 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC17.7■□□□□ 0.42
PTCHD3Q3KNS1 MFHAS1-201ENST00000276282 6414 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
PTCHD3Q3KNS1 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
PTCHD3Q3KNS1 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
PTCHD3Q3KNS1 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC17.7■□□□□ 0.42
PTCHD3Q3KNS1 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC17.7■□□□□ 0.42
PTCHD3Q3KNS1 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC17.69■□□□□ 0.42
PTCHD3Q3KNS1 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
PTCHD3Q3KNS1 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
PTCHD3Q3KNS1 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC17.69■□□□□ 0.42
PTCHD3Q3KNS1 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
PTCHD3Q3KNS1 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
PTCHD3Q3KNS1 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
PTCHD3Q3KNS1 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC17.69■□□□□ 0.42
PTCHD3Q3KNS1 NOC2LP2-201ENST00000407594 1944 ntBASIC17.69■□□□□ 0.42
PTCHD3Q3KNS1 SP100-208ENST00000427101 1922 ntTSL 2 BASIC17.69■□□□□ 0.42
PTCHD3Q3KNS1 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
PTCHD3Q3KNS1 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
PTCHD3Q3KNS1 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC17.69■□□□□ 0.42
PTCHD3Q3KNS1 FXN-203ENST00000396366 922 ntTSL 2 BASIC17.69■□□□□ 0.42
PTCHD3Q3KNS1 PVRIG2P-201ENST00000435460 978 ntBASIC17.69■□□□□ 0.42
PTCHD3Q3KNS1 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC17.69■□□□□ 0.42
PTCHD3Q3KNS1 LY6E-213ENST00000522528 606 ntTSL 3 BASIC17.69■□□□□ 0.42
PTCHD3Q3KNS1 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC17.69■□□□□ 0.42
PTCHD3Q3KNS1 AL136038.3-201ENST00000561909 1096 ntBASIC17.69■□□□□ 0.42
PTCHD3Q3KNS1 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC17.69■□□□□ 0.42
PTCHD3Q3KNS1 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC17.69■□□□□ 0.42
PTCHD3Q3KNS1 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC17.69■□□□□ 0.42
PTCHD3Q3KNS1 AC116407.4-201ENST00000623319 1061 ntBASIC17.69■□□□□ 0.42
PTCHD3Q3KNS1 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
PTCHD3Q3KNS1 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
PTCHD3Q3KNS1 GPR135-201ENST00000395116 4578 ntAPPRIS P1 BASIC17.69■□□□□ 0.42
PTCHD3Q3KNS1 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
PTCHD3Q3KNS1 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC17.69■□□□□ 0.42
PTCHD3Q3KNS1 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
PTCHD3Q3KNS1 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
PTCHD3Q3KNS1 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
PTCHD3Q3KNS1 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
PTCHD3Q3KNS1 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
PTCHD3Q3KNS1 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
PTCHD3Q3KNS1 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
PTCHD3Q3KNS1 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC17.68■□□□□ 0.42
PTCHD3Q3KNS1 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
PTCHD3Q3KNS1 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
PTCHD3Q3KNS1 UNKL-204ENST00000389221 5116 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
PTCHD3Q3KNS1 BCL2L10-201ENST00000260442 1249 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
PTCHD3Q3KNS1 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
PTCHD3Q3KNS1 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
PTCHD3Q3KNS1 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
PTCHD3Q3KNS1 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC17.68■□□□□ 0.42
PTCHD3Q3KNS1 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC17.68■□□□□ 0.42
PTCHD3Q3KNS1 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC17.68■□□□□ 0.42
PTCHD3Q3KNS1 NOMO2-212ENST00000622306 4252 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
PTCHD3Q3KNS1 CLN6-214ENST00000636314 442 ntTSL 3 BASIC17.68■□□□□ 0.42
PTCHD3Q3KNS1 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
PTCHD3Q3KNS1 PRKAR2A-201ENST00000265563 6471 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
PTCHD3Q3KNS1 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
PTCHD3Q3KNS1 AC093010.1-201ENST00000473625 1624 ntBASIC17.68■□□□□ 0.42
PTCHD3Q3KNS1 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
PTCHD3Q3KNS1 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
PTCHD3Q3KNS1 FLJ13224-201ENST00000313737 1514 ntBASIC17.67■□□□□ 0.42
PTCHD3Q3KNS1 SEPT11-201ENST00000264893 5593 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
PTCHD3Q3KNS1 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC17.67■□□□□ 0.42
PTCHD3Q3KNS1 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
PTCHD3Q3KNS1 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
PTCHD3Q3KNS1 AC090340.1-201ENST00000620778 4980 ntBASIC17.67■□□□□ 0.42
PTCHD3Q3KNS1 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
PTCHD3Q3KNS1 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
PTCHD3Q3KNS1 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
PTCHD3Q3KNS1 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 49 ms