Protein–RNA interactions for Protein: Q08174

PCDH1, Protocadherin-1, humanhuman

Predictions only

Length 1,060 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1Q08174 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
PCDH1Q08174 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC17.47■□□□□ 0.39
PCDH1Q08174 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC17.47■□□□□ 0.39
PCDH1Q08174 ASXL1-202ENST00000375687 7031 ntAPPRIS P2 TSL 5 BASIC17.47■□□□□ 0.39
PCDH1Q08174 AL391807.1-203ENST00000604392 2365 ntBASIC17.47■□□□□ 0.39
PCDH1Q08174 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC17.47■□□□□ 0.39
PCDH1Q08174 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
PCDH1Q08174 ZBTB33-201ENST00000326624 5211 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
PCDH1Q08174 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
PCDH1Q08174 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
PCDH1Q08174 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
PCDH1Q08174 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
PCDH1Q08174 AGAP2-201ENST00000257897 5388 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
PCDH1Q08174 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
PCDH1Q08174 RNF169-201ENST00000299563 7823 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
PCDH1Q08174 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC17.46■□□□□ 0.39
PCDH1Q08174 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC17.46■□□□□ 0.39
PCDH1Q08174 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC17.46■□□□□ 0.39
PCDH1Q08174 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
PCDH1Q08174 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
PCDH1Q08174 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC17.46■□□□□ 0.39
PCDH1Q08174 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
PCDH1Q08174 NARF-204ENST00000390006 1766 ntTSL 2 BASIC17.46■□□□□ 0.39
PCDH1Q08174 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
PCDH1Q08174 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
PCDH1Q08174 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
PCDH1Q08174 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
PCDH1Q08174 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
PCDH1Q08174 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
PCDH1Q08174 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
PCDH1Q08174 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
PCDH1Q08174 AC005521.1-201ENST00000393351 872 ntBASIC17.46■□□□□ 0.39
PCDH1Q08174 AC117947.1-201ENST00000427448 529 ntBASIC17.46■□□□□ 0.39
PCDH1Q08174 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC17.46■□□□□ 0.39
PCDH1Q08174 TK1-205ENST00000590862 642 ntTSL 3 BASIC17.46■□□□□ 0.39
PCDH1Q08174 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
PCDH1Q08174 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC17.46■□□□□ 0.39
PCDH1Q08174 AC024563.2-201ENST00000603282 481 ntBASIC17.46■□□□□ 0.39
PCDH1Q08174 GXYLT1P4-201ENST00000613576 1192 ntBASIC17.46■□□□□ 0.39
PCDH1Q08174 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
PCDH1Q08174 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
PCDH1Q08174 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC17.46■□□□□ 0.39
PCDH1Q08174 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC17.46■□□□□ 0.39
PCDH1Q08174 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
PCDH1Q08174 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
PCDH1Q08174 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
PCDH1Q08174 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC17.46■□□□□ 0.39
PCDH1Q08174 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.38
PCDH1Q08174 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC17.45■□□□□ 0.38
PCDH1Q08174 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
PCDH1Q08174 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC17.45■□□□□ 0.38
PCDH1Q08174 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
PCDH1Q08174 CERS6-201ENST00000305747 7217 ntAPPRIS P3 TSL 2 BASIC17.45■□□□□ 0.38
PCDH1Q08174 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC17.45■□□□□ 0.38
PCDH1Q08174 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC17.45■□□□□ 0.38
PCDH1Q08174 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
PCDH1Q08174 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
PCDH1Q08174 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC17.45■□□□□ 0.38
PCDH1Q08174 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
PCDH1Q08174 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC17.45■□□□□ 0.38
PCDH1Q08174 TK2-213ENST00000563369 882 ntTSL 5 BASIC17.45■□□□□ 0.38
PCDH1Q08174 AC139887.4-201ENST00000607877 719 ntBASIC17.45■□□□□ 0.38
PCDH1Q08174 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
PCDH1Q08174 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
PCDH1Q08174 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
PCDH1Q08174 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
PCDH1Q08174 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
PCDH1Q08174 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
PCDH1Q08174 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC17.45■□□□□ 0.38
PCDH1Q08174 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
PCDH1Q08174 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
PCDH1Q08174 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
PCDH1Q08174 AC006116.8-202ENST00000587620 1550 ntBASIC17.45■□□□□ 0.38
PCDH1Q08174 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC17.44■□□□□ 0.38
PCDH1Q08174 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC17.44■□□□□ 0.38
PCDH1Q08174 ADAMTS7-201ENST00000388820 5490 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
PCDH1Q08174 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
PCDH1Q08174 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
PCDH1Q08174 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
PCDH1Q08174 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
PCDH1Q08174 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
PCDH1Q08174 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC17.44■□□□□ 0.38
PCDH1Q08174 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC17.44■□□□□ 0.38
PCDH1Q08174 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
PCDH1Q08174 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC17.44■□□□□ 0.38
PCDH1Q08174 HOMER2P1-201ENST00000455653 964 ntBASIC17.44■□□□□ 0.38
PCDH1Q08174 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC17.44■□□□□ 0.38
PCDH1Q08174 TEN1-204ENST00000588202 862 ntTSL 3 BASIC17.44■□□□□ 0.38
PCDH1Q08174 USF2-205ENST00000594064 1179 ntTSL 2 BASIC17.44■□□□□ 0.38
PCDH1Q08174 AL136038.4-201ENST00000603606 1261 ntBASIC17.44■□□□□ 0.38
PCDH1Q08174 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC17.44■□□□□ 0.38
PCDH1Q08174 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC17.44■□□□□ 0.38
PCDH1Q08174 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC17.44■□□□□ 0.38
PCDH1Q08174 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
PCDH1Q08174 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
PCDH1Q08174 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
PCDH1Q08174 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
PCDH1Q08174 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
PCDH1Q08174 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC17.44■□□□□ 0.38
PCDH1Q08174 DMRTA1-201ENST00000325870 5569 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 26.1 ms