Protein–RNA interactions for Protein: P62891

RPL39, 60S ribosomal protein L39, humanhuman

Known RBP Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPL39P62891 SCAP-201ENST00000265565 4394 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
RPL39P62891 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC12.83□□□□□ -0.36
RPL39P62891 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC12.83□□□□□ -0.36
RPL39P62891 TRIM24-201ENST00000343526 8410 ntAPPRIS P3 TSL 1 (best) BASIC12.83□□□□□ -0.36
RPL39P62891 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
RPL39P62891 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
RPL39P62891 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
RPL39P62891 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC12.83□□□□□ -0.36
RPL39P62891 STAT5A-201ENST00000345506 4301 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
RPL39P62891 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
RPL39P62891 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
RPL39P62891 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
RPL39P62891 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC12.83□□□□□ -0.36
RPL39P62891 SRSF12-201ENST00000452027 3599 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
RPL39P62891 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
RPL39P62891 NEO1-202ENST00000339362 7342 ntAPPRIS P3 TSL 5 BASIC12.82□□□□□ -0.36
RPL39P62891 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC12.82□□□□□ -0.36
RPL39P62891 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC12.82□□□□□ -0.36
RPL39P62891 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC12.82□□□□□ -0.36
RPL39P62891 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC12.82□□□□□ -0.36
RPL39P62891 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC12.82□□□□□ -0.36
RPL39P62891 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
RPL39P62891 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
RPL39P62891 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC12.82□□□□□ -0.36
RPL39P62891 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC12.82□□□□□ -0.36
RPL39P62891 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC12.82□□□□□ -0.36
RPL39P62891 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
RPL39P62891 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC12.82□□□□□ -0.36
RPL39P62891 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
RPL39P62891 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
RPL39P62891 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
RPL39P62891 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
RPL39P62891 TK2-208ENST00000545043 1120 ntTSL 2 BASIC12.82□□□□□ -0.36
RPL39P62891 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC12.82□□□□□ -0.36
RPL39P62891 INO80E-214ENST00000620599 515 ntTSL 2 BASIC12.82□□□□□ -0.36
RPL39P62891 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC12.82□□□□□ -0.36
RPL39P62891 AK4-207ENST00000545314 6887 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
RPL39P62891 AP3D1-202ENST00000355272 5034 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
RPL39P62891 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC12.82□□□□□ -0.36
RPL39P62891 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC12.82□□□□□ -0.36
RPL39P62891 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
RPL39P62891 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
RPL39P62891 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
RPL39P62891 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
RPL39P62891 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
RPL39P62891 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
RPL39P62891 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC12.81□□□□□ -0.36
RPL39P62891 KIF5C-201ENST00000435030 6931 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
RPL39P62891 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC12.81□□□□□ -0.36
RPL39P62891 EIF4G3-205ENST00000400422 5762 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
RPL39P62891 BTBD11-205ENST00000490090 4614 ntTSL 2 BASIC12.81□□□□□ -0.36
RPL39P62891 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC12.81□□□□□ -0.36
RPL39P62891 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC12.81□□□□□ -0.36
RPL39P62891 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC12.81□□□□□ -0.36
RPL39P62891 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC12.81□□□□□ -0.36
RPL39P62891 CDC42BPG-201ENST00000342711 5742 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
RPL39P62891 SALL3-202ENST00000537592 6555 ntAPPRIS P1 TSL 5 BASIC12.81□□□□□ -0.36
RPL39P62891 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC12.81□□□□□ -0.36
RPL39P62891 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
RPL39P62891 AL109659.2-201ENST00000606809 1674 ntBASIC12.81□□□□□ -0.36
RPL39P62891 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC12.81□□□□□ -0.36
RPL39P62891 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
RPL39P62891 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
RPL39P62891 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
RPL39P62891 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC12.81□□□□□ -0.36
RPL39P62891 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
RPL39P62891 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
RPL39P62891 AP000593.1-201ENST00000393668 712 ntBASIC12.81□□□□□ -0.36
RPL39P62891 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
RPL39P62891 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC12.81□□□□□ -0.36
RPL39P62891 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC12.81□□□□□ -0.36
RPL39P62891 AC131212.4-201ENST00000623606 975 ntBASIC12.81□□□□□ -0.36
RPL39P62891 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC12.81□□□□□ -0.36
RPL39P62891 AL355312.1-201ENST00000407115 2176 ntBASIC12.81□□□□□ -0.36
RPL39P62891 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC12.81□□□□□ -0.36
RPL39P62891 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC12.81□□□□□ -0.36
RPL39P62891 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC12.81□□□□□ -0.36
RPL39P62891 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
RPL39P62891 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC12.81□□□□□ -0.36
RPL39P62891 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
RPL39P62891 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC12.81□□□□□ -0.36
RPL39P62891 NEO1-201ENST00000261908 7088 ntAPPRIS P3 TSL 1 (best) BASIC12.81□□□□□ -0.36
RPL39P62891 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
RPL39P62891 SLC2A10-201ENST00000359271 4389 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
RPL39P62891 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC12.8□□□□□ -0.36
RPL39P62891 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
RPL39P62891 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
RPL39P62891 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC12.8□□□□□ -0.36
RPL39P62891 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
RPL39P62891 SLC7A5-201ENST00000261622 4537 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
RPL39P62891 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC12.8□□□□□ -0.36
RPL39P62891 ADRB1-201ENST00000369295 2853 ntAPPRIS P1 BASIC12.8□□□□□ -0.36
RPL39P62891 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC12.8□□□□□ -0.36
RPL39P62891 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC12.8□□□□□ -0.36
RPL39P62891 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC12.8□□□□□ -0.36
RPL39P62891 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC12.8□□□□□ -0.36
RPL39P62891 ADAMTS13-206ENST00000371929 4934 ntAPPRIS P4 TSL 1 (best) BASIC12.8□□□□□ -0.36
RPL39P62891 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
RPL39P62891 AC018695.7-201ENST00000624587 2492 ntBASIC12.8□□□□□ -0.36
RPL39P62891 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
Retrieved 100 of 98,524 protein–RNA pairs in 28.5 ms