Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC24.92■■□□□ 1.58
MSH6P52701 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC24.92■■□□□ 1.58
MSH6P52701 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC24.92■■□□□ 1.58
MSH6P52701 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC24.92■■□□□ 1.58
MSH6P52701 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC24.92■■□□□ 1.58
MSH6P52701 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC24.92■■□□□ 1.58
MSH6P52701 ARRB2-203ENST00000381488 1236 ntTSL 2 BASIC24.92■■□□□ 1.58
MSH6P52701 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC24.92■■□□□ 1.58
MSH6P52701 ACTG1P14-201ENST00000446382 1122 ntBASIC24.92■■□□□ 1.58
MSH6P52701 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC24.92■■□□□ 1.58
MSH6P52701 IGHV3-65-201ENST00000523210 341 ntBASIC24.92■■□□□ 1.58
MSH6P52701 CD63-210ENST00000550776 870 ntTSL 5 BASIC24.92■■□□□ 1.58
MSH6P52701 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC24.92■■□□□ 1.58
MSH6P52701 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC24.92■■□□□ 1.58
MSH6P52701 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC24.92■■□□□ 1.58
MSH6P52701 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC24.91■■□□□ 1.58
MSH6P52701 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC24.91■■□□□ 1.58
MSH6P52701 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC24.91■■□□□ 1.58
MSH6P52701 CACNA1H-201ENST00000348261 8208 ntAPPRIS P4 TSL 1 (best) BASIC24.91■■□□□ 1.58
MSH6P52701 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC24.91■■□□□ 1.58
MSH6P52701 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC24.91■■□□□ 1.58
MSH6P52701 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC24.91■■□□□ 1.58
MSH6P52701 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC24.91■■□□□ 1.58
MSH6P52701 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC24.91■■□□□ 1.58
MSH6P52701 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC24.91■■□□□ 1.58
MSH6P52701 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC24.91■■□□□ 1.58
MSH6P52701 IGLL3P-201ENST00000412472 434 ntBASIC24.91■■□□□ 1.58
MSH6P52701 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC24.91■■□□□ 1.58
MSH6P52701 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC24.91■■□□□ 1.58
MSH6P52701 PNPO-202ENST00000434554 1196 ntTSL 2 BASIC24.91■■□□□ 1.58
MSH6P52701 ARTN-206ENST00000472435 402 ntTSL 3 BASIC24.91■■□□□ 1.58
MSH6P52701 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC24.91■■□□□ 1.58
MSH6P52701 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC24.91■■□□□ 1.58
MSH6P52701 AC008667.4-201ENST00000607370 168 ntBASIC24.91■■□□□ 1.58
MSH6P52701 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC24.91■■□□□ 1.58
MSH6P52701 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC24.91■■□□□ 1.58
MSH6P52701 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC24.9■■□□□ 1.58
MSH6P52701 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC24.9■■□□□ 1.58
MSH6P52701 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC24.9■■□□□ 1.58
MSH6P52701 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC24.9■■□□□ 1.58
MSH6P52701 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC24.9■■□□□ 1.58
MSH6P52701 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC24.9■■□□□ 1.58
MSH6P52701 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC24.9■■□□□ 1.58
MSH6P52701 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC24.9■■□□□ 1.58
MSH6P52701 AMHR2-202ENST00000379791 1437 ntTSL 1 (best) BASIC24.9■■□□□ 1.58
MSH6P52701 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC24.9■■□□□ 1.58
MSH6P52701 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC24.9■■□□□ 1.58
MSH6P52701 AC005034.1-201ENST00000426657 489 ntBASIC24.9■■□□□ 1.58
MSH6P52701 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC24.9■■□□□ 1.58
MSH6P52701 AP006333.1-201ENST00000543817 575 ntTSL 4 BASIC24.9■■□□□ 1.58
MSH6P52701 INO80C-206ENST00000586489 594 ntTSL 3 BASIC24.9■■□□□ 1.58
MSH6P52701 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC24.9■■□□□ 1.58
MSH6P52701 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC24.9■■□□□ 1.58
MSH6P52701 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC24.9■■□□□ 1.58
MSH6P52701 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC24.9■■□□□ 1.58
MSH6P52701 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC24.9■■□□□ 1.58
MSH6P52701 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC24.9■■□□□ 1.58
MSH6P52701 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC24.89■■□□□ 1.58
MSH6P52701 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC24.89■■□□□ 1.58
MSH6P52701 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC24.89■■□□□ 1.58
MSH6P52701 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC24.89■■□□□ 1.58
MSH6P52701 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC24.89■■□□□ 1.58
MSH6P52701 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC24.89■■□□□ 1.57
MSH6P52701 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC24.89■■□□□ 1.57
MSH6P52701 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC24.89■■□□□ 1.57
MSH6P52701 COPE-202ENST00000349893 948 ntTSL 2 BASIC24.89■■□□□ 1.57
MSH6P52701 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC24.89■■□□□ 1.57
MSH6P52701 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC24.89■■□□□ 1.57
MSH6P52701 FAM58CP-201ENST00000435741 640 ntBASIC24.89■■□□□ 1.57
MSH6P52701 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC24.89■■□□□ 1.57
MSH6P52701 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC24.89■■□□□ 1.57
MSH6P52701 SNHG8-201ENST00000602414 672 ntTSL 1 (best) BASIC24.89■■□□□ 1.57
MSH6P52701 SNHG8-205ENST00000602819 470 ntTSL 2 BASIC24.89■■□□□ 1.57
MSH6P52701 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC24.89■■□□□ 1.57
MSH6P52701 AF228730.6-201ENST00000641497 218 ntBASIC24.89■■□□□ 1.57
MSH6P52701 AC084121.3-201ENST00000641716 218 ntBASIC24.89■■□□□ 1.57
MSH6P52701 AC105233.6-201ENST00000642093 218 ntBASIC24.89■■□□□ 1.57
MSH6P52701 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC24.89■■□□□ 1.57
MSH6P52701 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC24.89■■□□□ 1.57
MSH6P52701 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC24.89■■□□□ 1.57
MSH6P52701 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC24.89■■□□□ 1.57
MSH6P52701 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC24.88■■□□□ 1.57
MSH6P52701 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC24.88■■□□□ 1.57
MSH6P52701 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC24.88■■□□□ 1.57
MSH6P52701 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC24.88■■□□□ 1.57
MSH6P52701 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC24.88■■□□□ 1.57
MSH6P52701 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC24.88■■□□□ 1.57
MSH6P52701 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC24.88■■□□□ 1.57
MSH6P52701 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC24.88■■□□□ 1.57
MSH6P52701 KLK8-202ENST00000320838 456 ntTSL 5 BASIC24.88■■□□□ 1.57
MSH6P52701 NKAIN2-201ENST00000368416 1106 ntTSL 1 (best) BASIC24.88■■□□□ 1.57
MSH6P52701 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC24.88■■□□□ 1.57
MSH6P52701 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC24.88■■□□□ 1.57
MSH6P52701 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC24.88■■□□□ 1.57
MSH6P52701 TK1-204ENST00000590430 683 ntTSL 3 BASIC24.88■■□□□ 1.57
MSH6P52701 AC004835.2-201ENST00000603762 682 ntBASIC24.88■■□□□ 1.57
MSH6P52701 CITED2-204ENST00000618718 901 ntTSL 2 BASIC24.88■■□□□ 1.57
MSH6P52701 AL513210.1-201ENST00000629608 234 ntBASIC24.88■■□□□ 1.57
MSH6P52701 AC010507.1-201ENST00000633895 436 ntBASIC24.88■■□□□ 1.57
MSH6P52701 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC24.88■■□□□ 1.57
Retrieved 100 of 98,524 protein–RNA pairs in 37.5 ms