Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
PTPN9P43378 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
PTPN9P43378 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
PTPN9P43378 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
PTPN9P43378 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
PTPN9P43378 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC18.81■□□□□ 0.6
PTPN9P43378 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC18.81■□□□□ 0.6
PTPN9P43378 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
PTPN9P43378 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
PTPN9P43378 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
PTPN9P43378 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
PTPN9P43378 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC18.8■□□□□ 0.6
PTPN9P43378 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
PTPN9P43378 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC18.8■□□□□ 0.6
PTPN9P43378 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC18.8■□□□□ 0.6
PTPN9P43378 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
PTPN9P43378 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
PTPN9P43378 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC18.8■□□□□ 0.6
PTPN9P43378 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC18.8■□□□□ 0.6
PTPN9P43378 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
PTPN9P43378 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
PTPN9P43378 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC18.8■□□□□ 0.6
PTPN9P43378 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC18.8■□□□□ 0.6
PTPN9P43378 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
PTPN9P43378 TSPY12P-201ENST00000421279 868 ntBASIC18.8■□□□□ 0.6
PTPN9P43378 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC18.8■□□□□ 0.6
PTPN9P43378 ANKRD20A8P-203ENST00000641373 517 ntBASIC18.8■□□□□ 0.6
PTPN9P43378 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
PTPN9P43378 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC18.8■□□□□ 0.6
PTPN9P43378 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
PTPN9P43378 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
PTPN9P43378 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
PTPN9P43378 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC18.8■□□□□ 0.6
PTPN9P43378 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
PTPN9P43378 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
PTPN9P43378 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
PTPN9P43378 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
PTPN9P43378 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
PTPN9P43378 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
PTPN9P43378 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
PTPN9P43378 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
PTPN9P43378 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
PTPN9P43378 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC18.79■□□□□ 0.6
PTPN9P43378 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC18.79■□□□□ 0.6
PTPN9P43378 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC18.79■□□□□ 0.6
PTPN9P43378 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
PTPN9P43378 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC18.79■□□□□ 0.6
PTPN9P43378 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
PTPN9P43378 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC18.79■□□□□ 0.6
PTPN9P43378 Z83836.1-201ENST00000624605 1642 ntBASIC18.79■□□□□ 0.6
PTPN9P43378 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
PTPN9P43378 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
PTPN9P43378 OXT-201ENST00000217386 513 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
PTPN9P43378 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
PTPN9P43378 VKORC1-205ENST00000394975 1012 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
PTPN9P43378 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC18.79■□□□□ 0.6
PTPN9P43378 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
PTPN9P43378 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
PTPN9P43378 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC18.79■□□□□ 0.6
PTPN9P43378 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC18.79■□□□□ 0.6
PTPN9P43378 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC18.79■□□□□ 0.6
PTPN9P43378 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC18.79■□□□□ 0.6
PTPN9P43378 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC18.79■□□□□ 0.6
PTPN9P43378 AKR1A1-214ENST00000621846 1360 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
PTPN9P43378 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
PTPN9P43378 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
PTPN9P43378 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
PTPN9P43378 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
PTPN9P43378 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
PTPN9P43378 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
PTPN9P43378 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
PTPN9P43378 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
PTPN9P43378 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
PTPN9P43378 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
PTPN9P43378 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC18.78■□□□□ 0.6
PTPN9P43378 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC18.78■□□□□ 0.6
PTPN9P43378 AC068880.1-201ENST00000507289 2297 ntBASIC18.78■□□□□ 0.6
PTPN9P43378 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
PTPN9P43378 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
PTPN9P43378 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC18.78■□□□□ 0.6
PTPN9P43378 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
PTPN9P43378 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC18.78■□□□□ 0.6
PTPN9P43378 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC18.78■□□□□ 0.6
PTPN9P43378 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC18.78■□□□□ 0.6
PTPN9P43378 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC18.78■□□□□ 0.6
PTPN9P43378 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC18.78■□□□□ 0.6
PTPN9P43378 RABAC1-208ENST00000601078 728 ntTSL 3 BASIC18.78■□□□□ 0.6
PTPN9P43378 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
PTPN9P43378 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC18.78■□□□□ 0.6
PTPN9P43378 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
PTPN9P43378 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
PTPN9P43378 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
PTPN9P43378 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
PTPN9P43378 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
PTPN9P43378 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
PTPN9P43378 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
PTPN9P43378 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
PTPN9P43378 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC18.77■□□□□ 0.6
PTPN9P43378 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
PTPN9P43378 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 42.7 ms