Protein–RNA interactions for Protein: P31269

HOXA9, Homeobox protein Hox-A9, humanhuman

Predictions only

Length 272 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA9P31269 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
HOXA9P31269 INIP-202ENST00000374236 874 ntTSL 2 BASIC18.77■□□□□ 0.6
HOXA9P31269 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
HOXA9P31269 MIR1233-2-201ENST00000408138 82 ntBASIC18.77■□□□□ 0.6
HOXA9P31269 MIR1233-1-201ENST00000408722 82 ntBASIC18.77■□□□□ 0.6
HOXA9P31269 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
HOXA9P31269 AC096633.1-201ENST00000422446 749 ntBASIC18.77■□□□□ 0.6
HOXA9P31269 AC098831.1-202ENST00000438821 336 ntBASIC18.77■□□□□ 0.6
HOXA9P31269 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC18.77■□□□□ 0.6
HOXA9P31269 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC18.77■□□□□ 0.6
HOXA9P31269 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC18.77■□□□□ 0.6
HOXA9P31269 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.6
HOXA9P31269 NKAPP1-205ENST00000585790 367 ntBASIC18.77■□□□□ 0.6
HOXA9P31269 NUTM2B-AS1-211ENST00000601369 1233 ntTSL 2 BASIC18.77■□□□□ 0.6
HOXA9P31269 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC18.77■□□□□ 0.6
HOXA9P31269 AC107918.4-202ENST00000641623 219 ntBASIC18.77■□□□□ 0.6
HOXA9P31269 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
HOXA9P31269 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC18.77■□□□□ 0.6
HOXA9P31269 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
HOXA9P31269 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
HOXA9P31269 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.59
HOXA9P31269 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
HOXA9P31269 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
HOXA9P31269 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
HOXA9P31269 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
HOXA9P31269 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
HOXA9P31269 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
HOXA9P31269 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
HOXA9P31269 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC18.76■□□□□ 0.59
HOXA9P31269 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
HOXA9P31269 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
HOXA9P31269 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC18.76■□□□□ 0.59
HOXA9P31269 LBH-204ENST00000406087 559 ntTSL 4 BASIC18.76■□□□□ 0.59
HOXA9P31269 AC007967.3-201ENST00000434308 558 ntBASIC18.76■□□□□ 0.59
HOXA9P31269 PGAM5P1-201ENST00000518923 814 ntBASIC18.76■□□□□ 0.59
HOXA9P31269 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC18.76■□□□□ 0.59
HOXA9P31269 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC18.76■□□□□ 0.59
HOXA9P31269 MTDHP4-201ENST00000600287 670 ntBASIC18.76■□□□□ 0.59
HOXA9P31269 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
HOXA9P31269 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
HOXA9P31269 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
HOXA9P31269 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
HOXA9P31269 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC18.76■□□□□ 0.59
HOXA9P31269 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
HOXA9P31269 AC132938.6-201ENST00000623828 1655 ntBASIC18.76■□□□□ 0.59
HOXA9P31269 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC18.76■□□□□ 0.59
HOXA9P31269 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC18.75■□□□□ 0.59
HOXA9P31269 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC18.75■□□□□ 0.59
HOXA9P31269 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC18.75■□□□□ 0.59
HOXA9P31269 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC18.75■□□□□ 0.59
HOXA9P31269 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC18.75■□□□□ 0.59
HOXA9P31269 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC18.75■□□□□ 0.59
HOXA9P31269 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC18.75■□□□□ 0.59
HOXA9P31269 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
HOXA9P31269 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
HOXA9P31269 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
HOXA9P31269 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
HOXA9P31269 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC18.75■□□□□ 0.59
HOXA9P31269 LAGE3P1-201ENST00000425356 484 ntBASIC18.75■□□□□ 0.59
HOXA9P31269 AC122714.2-201ENST00000502787 707 ntBASIC18.75■□□□□ 0.59
HOXA9P31269 MSRA-206ENST00000521209 814 ntTSL 3 BASIC18.75■□□□□ 0.59
HOXA9P31269 AC012640.2-201ENST00000561606 901 ntBASIC18.75■□□□□ 0.59
HOXA9P31269 AC034105.1-201ENST00000563488 319 ntBASIC18.75■□□□□ 0.59
HOXA9P31269 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC18.75■□□□□ 0.59
HOXA9P31269 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC18.75■□□□□ 0.59
HOXA9P31269 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC18.75■□□□□ 0.59
HOXA9P31269 Z83851.2-201ENST00000609564 659 ntBASIC18.75■□□□□ 0.59
HOXA9P31269 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
HOXA9P31269 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
HOXA9P31269 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC18.75■□□□□ 0.59
HOXA9P31269 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC18.75■□□□□ 0.59
HOXA9P31269 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC18.75■□□□□ 0.59
HOXA9P31269 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC18.75■□□□□ 0.59
HOXA9P31269 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
HOXA9P31269 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
HOXA9P31269 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
HOXA9P31269 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
HOXA9P31269 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC18.74■□□□□ 0.59
HOXA9P31269 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC18.74■□□□□ 0.59
HOXA9P31269 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
HOXA9P31269 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC18.74■□□□□ 0.59
HOXA9P31269 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC18.74■□□□□ 0.59
HOXA9P31269 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC18.74■□□□□ 0.59
HOXA9P31269 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
HOXA9P31269 DMAP1-201ENST00000315913 1552 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
HOXA9P31269 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC18.74■□□□□ 0.59
HOXA9P31269 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
HOXA9P31269 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
HOXA9P31269 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC18.74■□□□□ 0.59
HOXA9P31269 MIR940-201ENST00000401276 94 ntBASIC18.74■□□□□ 0.59
HOXA9P31269 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC18.74■□□□□ 0.59
HOXA9P31269 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC18.74■□□□□ 0.59
HOXA9P31269 AC092910.1-201ENST00000482027 1129 ntBASIC18.74■□□□□ 0.59
HOXA9P31269 AC105339.3-201ENST00000560043 636 ntBASIC18.74■□□□□ 0.59
HOXA9P31269 ARMC7-203ENST00000581078 1002 ntTSL 2 BASIC18.74■□□□□ 0.59
HOXA9P31269 AC073592.4-201ENST00000623827 446 ntBASIC18.74■□□□□ 0.59
HOXA9P31269 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC18.74■□□□□ 0.59
HOXA9P31269 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
HOXA9P31269 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
HOXA9P31269 AC079776.2-201ENST00000641154 1609 ntBASIC18.74■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 34.9 ms